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Cbln1os Gene Detail
Summary
  • Symbol
    Cbln1os
  • Name
    cerebellin 1 precursor protein opposite strand
  • Synonyms
    C230036H16Rik, Gm2694, lncRNA-PM, Synage
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3780864
    NCBI Gene: 100040294
  • Alliance
    gene page
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:88199440-88252182 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 42.16 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    402 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3780864
 lncRNA gene Chr8:88187097-88252195 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007358
 lincRNA gene Chr8:88483343-88534975 (+)
A/J MGP_AJ_G0007355
 lincRNA gene Chr8:85010634-85061137 (+)
AKR/J MGP_AKRJ_G0007327
 lincRNA gene Chr8:87528180-87577710 (+)
BALB/cJ MGP_BALBcJ_G0007333
 lincRNA gene Chr8:85182025-85232576 (+)
C3H/HeJ MGP_C3HHeJ_G0007277
 lincRNA gene Chr8:88125106-88174375 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007504
 lincRNA gene Chr8:91841515-91891763 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006697
 lincRNA gene Chr8:79018828-79070769 (+)
CAST/EiJ MGP_CASTEiJ_G0007179
 lincRNA gene Chr8:87538742-87588290 (+)
CBA/J MGP_CBAJ_G0007259
 lincRNA gene Chr8:94960630-95016599 (+)
DBA/2J MGP_DBA2J_G0007282
 lincRNA gene Chr8:84615950-84667345 (+)
FVB/NJ MGP_FVBNJ_G0007303
 lincRNA gene Chr8:83572563-83622249 (+)
LP/J MGP_LPJ_G0007363
 lincRNA gene Chr8:88614227-88667002 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0007279
 lincRNA gene Chr8:97466804-97521504 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007506
 lincRNA gene Chr8:87527345-87577271 (+)
PWK/PhJ MGP_PWKPhJ_G0007121
 lincRNA gene Chr8:83873729-83944881 (+)
SPRET/EiJ MGP_SPRETEiJ_G0007028
 lincRNA gene Chr8:86311081-86362685 (+)
WSB/EiJ MGP_WSBEiJ_G0007239
 lincRNA gene Chr8:87959821-88013651 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotypes from 1 allele in 1 genetic background
    31 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous knockout affects cerebellar neuronal and synaptic development, leading to motor dysfunction.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    754
  • Tissues
    7
  • cDNA Data
    7
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      62
    • RefSeq
      2
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 100040294 NCBI Gene Model | MGI Sequence Detail 52743 C57BL/6J ±  kb
    transcript NR_033430 RefSeq | MGI Sequence Detail 682 C57BL/6  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 7
    Other
    Accession IDs
    less
    MGI:4437736
    References
    more
    • Summaries
      All 42
      Developmental Gene Expression 2
      Phenotypes 31
    • Earliest
      J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
    • Latest
      J:340203 Jin Y, et al., Long noncoding RNA PM maintains cerebellar synaptic integrity and Cbln1 activation via Pax6/Mll1-mediated H3K4me3. PLoS Biol. 2021 Jun;19(6):e3001297
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory