Gm2606 Pseudogene Detail

Summary

• Symbol
  Gm2606
• Name
  predicted pseudogene 2606

• Feature Type
  pseudogene
• IDs
  MGI:3780774
  NCBI Gene: 100040109
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:12574975-12575976 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 5.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780774	pseudogene	Chr15:12574957-12576157 (+)
129S1/SvImJ	ENSMUSG00200033975	pseudogene	Chr15:9562252-9563253 (+)
A/J	ENSMUSG00195010446	pseudogene	Chr15:9468405-9469406 (+)
AKR/J	ENSMUSG00220023234	pseudogene	Chr15:9394282-9395283 (+)
BALB/cJ	ENSMUSG00180036296	pseudogene	Chr15:9465165-9466166 (+)
C3H/HeJ	ENSMUSG00175032280	pseudogene	Chr15:9622300-9623301 (+)
C57BL/6NJ	ENSMUSG00215026442	pseudogene	Chr15:9508069-9509070 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210025466	pseudogene	Chr15:9607353-9608354 (+)
DBA/2J	ENSMUSG00185032356	pseudogene	Chr15:9564419-9565420 (+)
FVB/NJ	ENSMUSG00205032218	pseudogene	Chr15:9449435-9450436 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230016228	pseudogene	Chr15:13055225-13056226 (+)
NOD/ShiLtJ	ENSMUSG00190010118	pseudogene	Chr15:9533142-9534143 (+)
NZO/HlLtJ	ENSMUSG00225024258	pseudogene	Chr15:13286562-13287563 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm2606
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000078300 (Evidence)
• NCBI Gene
  100040109

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078300	Ensembl Gene Model | MGI Sequence Detail	1002	C57BL/6J
transcript	ENSMUST00000100754	Ensembl | MGI Sequence Detail	1002	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;