Gm2348 Pseudogene Detail

Summary

• Symbol
  Gm2348
• Name
  predicted pseudogene 2348

• Feature Type
  pseudogene
• IDs
  MGI:3780518
  NCBI Gene: 100039633
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:8558619-8558918 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 3.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780518	pseudogene	Chr15:8558619-8558918 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011160	pseudogene	Chr15:5617613-5617912 (-)
A/J	MGP_AJ_G0011153	pseudogene	Chr15:5462707-5463006 (-)
AKR/J	MGP_AKRJ_G0011113	pseudogene	Chr15:5513328-5513627 (-)
BALB/cJ	MGP_BALBcJ_G0011123	pseudogene	Chr15:5378712-5379011 (-)
C3H/HeJ	MGP_C3HHeJ_G0011021	pseudogene	Chr15:5560864-5561163 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011416	pseudogene	Chr15:5807941-5808240 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010003	pseudogene	Chr15:5046925-5047270 (-)
CAST/EiJ	MGP_CASTEiJ_G0010845	pseudogene	Chr15:5550904-5551203 (-)
CBA/J	MGP_CBAJ_G0011001	pseudogene	Chr15:5924514-5924813 (-)
DBA/2J	MGP_DBA2J_G0011047	pseudogene	Chr15:5373575-5373874 (-)
FVB/NJ	MGP_FVBNJ_G0011051	pseudogene	Chr15:5293636-5293935 (-)
LP/J	MGP_LPJ_G0011138	pseudogene	Chr15:5519561-5519860 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011043	pseudogene	Chr15:6185007-6185306 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011393	pseudogene	Chr15:5558110-5558409 (-)
PWK/PhJ	MGP_PWKPhJ_G0010718	pseudogene	Chr15:5394515-5394814 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010540	pseudogene	Chr15:5438415-5438715 (-)
WSB/EiJ	MGP_WSBEiJ_G0010891	pseudogene	Chr15:5501456-5501755 (-)

Homology

• Gene Tree
  Gm2348
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm2348
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000078850 (Evidence)
• NCBI Gene
  100039633

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078850	Ensembl Gene Model | MGI Sequence Detail	300	C57BL/6J
transcript	ENSMUST00000108782	Ensembl | MGI Sequence Detail	300	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:175597 Overbeek PA, Direct Data Submission for Overbeek Lentiviral Transgenic Lines. MGI Direct Data Submission. 2011;