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Hmgn2-ps1 Pseudogene Detail
Summary
  • Symbol
    Hmgn2-ps1
  • Name
    high mobility group nucleosomal binding domain 2, pseudogene 1
  • Synonyms
    Hmgn4, OTTMUSG00000025692
  • Feature Type
    pseudogene
  • IDs
    MGI:3783162
    NCBI Gene: 100039489
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:84123313-84123591 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 43.00 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    33 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3783162
pseudogene Chr5:84123216-84124389 (+)
129S1/SvImJ MGP_129S1SvImJ_G0014875
pseudogene ChrX:139362018-139362290 (-)
A/J MGP_AJ_G0014868
pseudogene ChrX:138759145-138759417 (-)
AKR/J MGP_AKRJ_G0014810
pseudogene ChrX:143172674-143174558 (-)
BALB/cJ MGP_BALBcJ_G0014824
pseudogene ChrX:137003286-137003558 (-)
C3H/HeJ MGP_C3HHeJ_G0014660
pseudogene ChrX:139481258-139481530 (-)
C57BL/6NJ MGP_C57BL6NJ_G0011694
pseudogene Chr18:34482011-34482238 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0012952
pseudogene ChrX:130372910-130373177 (-)
CAST/EiJ MGP_CASTEiJ_G0014273
pseudogene ChrX:120197645-120197917 (-)
CBA/J MGP_CBAJ_G0014649
pseudogene ChrX:147843044-147843316 (-)
DBA/2J MGP_DBA2J_G0014732
pseudogene ChrX:137827922-137828194 (-)
FVB/NJ MGP_FVBNJ_G0014715
pseudogene ChrX:137058330-137058602 (-)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0014759
pseudogene ChrX:155439843-155440115 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0015293
pseudogene ChrX:138675848-138676120 (-)
PWK/PhJ MGP_PWKPhJ_G0014074
pseudogene ChrX:117033543-117033815 (-)
SPRET/EiJ MGP_SPRETEiJ_G0009726
pseudogene Chr1:106419439-106419711 (+)
WSB/EiJ MGP_WSBEiJ_G0014353
pseudogene ChrX:137085768-137086040 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    4 involving Hmgn2-ps1
  • Find Mice (IMSR)
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000079067 Ensembl Gene Model | MGI Sequence Detail 279 C57BL/6J ±  kb
transcript ENSMUST00000120716 Ensembl | MGI Sequence Detail 279 Not Applicable  
For the selected sequence
Other
Accession IDs
less
MGI:3780434
References
more
  • Summaries
    All 12
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/04/2020
MGI 6.15
The Jackson Laboratory