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Ctxnd1 Gene Detail
Summary
  • Symbol
    Ctxnd1
  • Name
    cortexin domain containing 1
  • Synonyms
    C77713, Gm2115
  • Feature Type
    protein coding gene
  • IDs
    MGI:3780284
    NCBI Gene: 100039239
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:84178182-84230446 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 48.35 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    511 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3780284
 protein coding gene Chr7:84178162-84232739 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007231
 lincRNA gene Chr7:86699386-86747529 (+)
A/J MGP_AJ_G0007228
 lincRNA gene Chr7:84632865-84682942 (+)
AKR/J MGP_AKRJ_G0007198
 lincRNA gene Chr7:86590843-86634124 (+)
BALB/cJ MGP_BALBcJ_G0007206
 lincRNA gene Chr7:84296276-84340753 (+)
C3H/HeJ MGP_C3HHeJ_G0007150
 lincRNA gene Chr7:87126057-87174073 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007376
 lincRNA gene Chr7:90044621-90091873 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006583
 lincRNA gene Chr7:86961763-87008148 (+)
CAST/EiJ MGP_CASTEiJ_G0007052
 lincRNA gene Chr7:78118236-78161100 (+)
CBA/J MGP_CBAJ_G0007133
 lincRNA gene Chr7:93074942-93122860 (+)
DBA/2J MGP_DBA2J_G0007154
 lincRNA gene Chr7:83124438-83168421 (+)
FVB/NJ MGP_FVBNJ_G0007177
 lincRNA gene Chr7:83069518-83117278 (+)
LP/J MGP_LPJ_G0007236
 lincRNA gene Chr7:87974008-88020439 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0007153
 lincRNA gene Chr7:93119643-93164513 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007379
 lincRNA gene Chr7:85955460-86000438 (+)
PWK/PhJ MGP_PWKPhJ_G0006995
 lincRNA gene Chr7:76377706-76421910 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006903
 lincRNA gene Chr7:72944913-72987499 (+)
WSB/EiJ MGP_WSBEiJ_G0007113
 lincRNA gene Chr7:86330982-86379542 (+)



Homology
more
  • Human Ortholog
    CTXND1, cortexin domain containing 1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CTXND1, cortexin domain containing 1
  • Synonyms
    LINC01314
  • Links
    NCBI Gene ID: 100996492
    UniProt: A0A1B0GTU2

  • Chr Location
    chr15:80195481-80252213 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Radiation induced
    2
  • Genomic Mutations
    3 involving Ctxnd1
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    715
  • Tissues
    8
  • cDNA Data
    5
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    31
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100039239 NCBI Gene Model | MGI Sequence Detail 52265 C57BL/6J ±  kb
transcript NM_001384188 RefSeq | MGI Sequence Detail 4742 C57BL/6  
polypeptide A0A1B0GST9 UniProt | EBI | MGI Sequence Detail 59 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 5
    Primer pair 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:2142319
References
more
  • Summaries
    All 29
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 12
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:263878 Aboudehen K, et al., Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. J Biol Chem. 2018 Jun 15;293(24):9388-9398
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory