Ccnq-ps2 Pseudogene Detail

Summary

• Symbol
  Ccnq-ps2
• Name
  cyclin Q, pseudogene 2
• Synonyms
  Gm9731

• Feature Type
  pseudogene
• IDs
  MGI:3780135
  NCBI Gene: 732482
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:27786083-27786829 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 15.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780135	pseudogene	Chr8:27786073-27787228 (+)
129S1/SvImJ	ENSMUSG00200022422	pseudogene	Chr8:22875912-22876658 (+)
A/J	ENSMUSG00195005556	pseudogene	Chr8:23384504-23385250 (+)
AKR/J	ENSMUSG00220027161	pseudogene	Chr8:23099815-23100558 (+)
BALB/cJ	ENSMUSG00180005613	pseudogene	Chr8:22909091-22909838 (+)
C3H/HeJ	ENSMUSG00175007070	pseudogene	Chr8:23062273-23063016 (+)
C57BL/6NJ	ENSMUSG00215012441	pseudogene	Chr8:22873348-22874094 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024246	pseudogene	Chr8:23233355-23234100 (+)
CAST/EiJ	ENSTCUG00005025222	pseudogene	Chr8:23197094-23197841 (+)
CBA/J	ENSMUSG00210014443	pseudogene	Chr8:22908100-22908846 (+)
DBA/2J	ENSMUSG00185041323	pseudogene	Chr8:28801917-28802660 (+)
FVB/NJ	ENSMUSG00205004632	pseudogene	Chr8:22413744-22414491 (+)
JF1/MsJ	ENSUMUG00000008745	pseudogene	Chr8:30586786-30587535 (+)
LP/J	ENSMUSG00230015553	pseudogene	Chr8:32468239-32468985 (+)
NOD/ShiLtJ	ENSMUSG00190004639	pseudogene	Chr8:22951503-22952249 (+)
NZO/HlLtJ	ENSMUSG00225021943	pseudogene	Chr8:36099988-36100734 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010017391	pseudogene	Chr8:23267746-23268484 (+)
WSB/EiJ	ENSIUOG00005010932	pseudogene	Chr8:23630509-23631255 (+)

Homology

• Gene Tree
  Ccnq-ps2
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000110154 (Evidence)
• NCBI Gene
  732482

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110154	Ensembl Gene Model | MGI Sequence Detail	747	C57BL/6J
transcript	ENSMUST00000209480	Ensembl | MGI Sequence Detail	747	Not Applicable

Other
Accession IDs

MGI:6887842

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Ccnq-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76783	Chr8:27786352-27786384 (+)	285 bp