Gm9493 Pseudogene Detail

Summary

• Symbol
  Gm9493
• Name
  predicted gene 9493

• Feature Type
  pseudogene
• IDs
  MGI:3779903
  NCBI Gene: 102638448
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:23597113-23597683 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 18.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  21 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779903	pseudogene	Chr19:23597059-23597717 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0035153	protein coding gene	Chr9:99599695-99600277 (+)
A/J	MGP_AJ_G0035135	protein coding gene	Chr9:96100766-96101348 (+)
AKR/J	MGP_AKRJ_G0035066	protein coding gene	Chr9:98444428-98445010 (+)
BALB/cJ	MGP_BALBcJ_G0035127	protein coding gene	Chr9:95781477-95782059 (+)
C3H/HeJ	MGP_C3HHeJ_G0034837	protein coding gene	Chr9:98846372-98846954 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0035647	protein coding gene	Chr9:102435604-102437946 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032075	protein coding gene	Chr9:37355832-37356405 (+)
CAST/EiJ	MGP_CASTEiJ_G0033672	protein coding gene	Chr9:38659840-38660483 (+)
CBA/J	MGP_CBAJ_G0034805	protein coding gene	Chr9:105974836-105975418 (+)
DBA/2J	MGP_DBA2J_G0034967	protein coding gene	Chr9:95615825-95616407 (+)
FVB/NJ	MGP_FVBNJ_G0034915	protein coding gene	Chr9:94446830-94447511 (+)
LP/J	MGP_LPJ_G0035046	protein coding gene	Chr9:99851950-99852532 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034954	protein coding gene	Chr9:107925030-107927156 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0035669	protein coding gene	Chr9:98668081-98668714 (+)
PWK/PhJ	MGP_PWKPhJ_G0033377	protein coding gene	Chr9:37462265-37462829 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0033691	protein coding gene	Chr9:98727279-98727942 (+)
WSB/EiJ	MGP_WSBEiJ_G0033785	protein coding gene	Chr9:38358684-38359338 (+)

Homology

• Gene Tree
  Gm9493
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000044424 (Evidence)
• NCBI Gene
  102638448

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000044424	Ensembl Gene Model | MGI Sequence Detail	571	C57BL/6J
transcript	ENSMUST00000104916	Ensembl | MGI Sequence Detail	571	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm9493:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155591	Chr19:23596689-23596691 (+)	-423 bp