Gm6445 Pseudogene Detail

Summary

• Symbol
  Gm6445
• Name
  predicted gene 6445

• Feature Type
  pseudogene
• IDs
  MGI:3779598
  NCBI Gene: 623688
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:9584468-9585740 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 6.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779598	pseudogene	Chr19:9584468-9585740 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195054142	pseudogene	Chr19:6471889-6473161 (+)
AKR/J	ENSMUSG00220051471	pseudogene	Chr19:6382632-6383904 (+)
BALB/cJ	ENSMUSG00180052018	pseudogene	Chr19:6835875-6837147 (+)
C3H/HeJ	ENSMUSG00175015004	pseudogene	Chr19:6109594-6110866 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045274	pseudogene	Chr19:6044327-6045598 (+)
CBA/J	ENSMUSG00210050897	pseudogene	Chr19:6310210-6311482 (+)
DBA/2J	ENSMUSG00185053080	pseudogene	Chr19:6719906-6721178 (+)
FVB/NJ	ENSMUSG00205053061	pseudogene	Chr19:6202631-6203903 (+)
JF1/MsJ	ENSUMUG00000056495	pseudogene	Chr19:6801051-6802323 (+)
LP/J	ENSMUSG00230054391	pseudogene	Chr19:7636879-7638151 (+)
NOD/ShiLtJ	ENSMUSG00190053194	pseudogene	Chr19:5891313-5892585 (-)
NZO/HlLtJ	ENSMUSG00225046936	pseudogene	Chr19:11345698-11346970 (+)
PWK/PhJ	ENSLUMG00010008713	pseudogene	Chr19:6148008-6149280 (+)
SPRET/EiJ	ENSMSPG00010051041	pseudogene	Chr19:5977057-5978329 (+)
WSB/EiJ	ENSIUOG00005051373	pseudogene	Chr19:5825371-5826643 (+)

Homology

• Gene Tree
  Gm6445
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000100141 (Evidence)
• NCBI Gene
  623688

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100141	Ensembl Gene Model | MGI Sequence Detail	1273	C57BL/6J
transcript	ENSMUST00000189515	Ensembl | MGI Sequence Detail	1112	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;