Atxn7l1os1 Gene Detail

Summary

• Symbol
  Atxn7l1os1
• Name
  ataxin 7-like 1, opposite strand 1
• Synonyms
  Gm11052

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3779275
  NCBI Gene: 100504517
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:33243993-33278853 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 14.08 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  262 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779275	antisense lncRNA gene	Chr12:33243993-33278853 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003131	antisense lncRNA gene	Chr12:31260236-31276664 (-)
A/J	MGP_AJ_G0003108	antisense lncRNA gene	Chr12:30320765-30345252 (-)
AKR/J	MGP_AKRJ_G0003088	antisense lncRNA gene	Chr12:31310441-31326878 (-)
BALB/cJ	MGP_BALBcJ_G0003095	antisense lncRNA gene	Chr12:30546467-30562972 (-)
C3H/HeJ	MGP_C3HHeJ_G0003051	antisense lncRNA gene	Chr12:31162954-31182658 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003238	antisense lncRNA gene	Chr12:32178478-32215671 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002772	antisense lncRNA gene	Chr12:29609587-29627879 (-)
CAST/EiJ	MGP_CASTEiJ_G0003020	antisense lncRNA gene	Chr12:26208140-26225236 (-)
CBA/J	MGP_CBAJ_G0003048	antisense lncRNA gene	Chr12:33221665-33240529 (-)
DBA/2J	MGP_DBA2J_G0003053	antisense lncRNA gene	Chr12:30140106-30158145 (-)
FVB/NJ	MGP_FVBNJ_G0003073	antisense lncRNA gene	Chr12:29928323-29951261 (-)
LP/J	MGP_LPJ_G0003128	antisense lncRNA gene	Chr12:31330956-31351104 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003062	antisense lncRNA gene	Chr12:32846006-32865501 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003242	antisense lncRNA gene	Chr12:30811013-30829467 (-)
PWK/PhJ	MGP_PWKPhJ_G0002978	antisense lncRNA gene	Chr12:24914571-24933670 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002922	antisense lncRNA gene	Chr12:25440882-25464443 (-)
WSB/EiJ	MGP_WSBEiJ_G0003051	antisense lncRNA gene	Chr12:31057779-31075399 (-)

Homology

• Gene Tree
  Atxn7l1os1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000079143 (Evidence)
• NCBI Gene
  100504517

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079143	Ensembl Gene Model | MGI Sequence Detail	34861	C57BL/6J
transcript	ENSMUST00000155877	Ensembl | MGI Sequence Detail	1836	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;