Slc60a2-ps2 Pseudogene Detail

Summary

• Symbol
  Slc60a2-ps2
• Name
  solute carrier family 60 member 2, pseudogene 2
• Synonyms
  G630090E17Rik, Mfsd4b3, Mfsd4b3-ps, Slc60a2-ps2, Slc61a1

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3773841
  NCBI Gene: 100041085
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr10:39822903-39836149 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 21.35 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  459 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3773841	pseudogene	Chr10:39822903-39836180 (-)
129S1/SvImJ	ENSMUSG00200010088	pseudogene	Chr10:36678095-36691363 (-)
A/J	ENSMUSG00195017669	pseudogene	Chr10:36980823-36994096 (-)
AKR/J	ENSMUSG00220029594	pseudogene	Chr10:36657453-36670738 (-)
BALB/cJ	ENSMUSG00180016886	pseudogene	Chr10:37066093-37079359 (-)
C3H/HeJ	ENSMUSG00175012776	pseudogene	Chr10:36860400-36873672 (-)
C57BL/6NJ	ENSMUSG00215011524	pseudogene	Chr10:36610952-36624234 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029130	pseudogene	Chr10:37064604-37078210 (-)
CBA/J	ENSMUSG00210025985	pseudogene	Chr10:36753868-36767146 (-)
DBA/2J	ENSMUSG00185008147	pseudogene	Chr10:36906428-36919707 (-)
FVB/NJ	ENSMUSG00205014165	pseudogene	Chr10:36821031-36834309 (-)
JF1/MsJ	ENSUMUG00000036313	pseudogene	Chr10:36677830-36693822 (-)
LP/J	ENSMUSG00230016253	pseudogene	Chr10:38667141-38680411 (-)
NOD/ShiLtJ	ENSMUSG00190034147	pseudogene	Chr10:37034778-37048050 (-)
NZO/HlLtJ	ENSMUSG00225017881	pseudogene	Chr10:42994000-43007278 (-)
PWK/PhJ	ENSLUMG00010008264	pseudogene	Chr10:36798741-36814679 (-)
SPRET/EiJ	ENSMSPG00010021003	pseudogene	Chr10:37821111-37834268 (-)
WSB/EiJ	ENSIUOG00005015183	pseudogene	Chr10:36574495-36590473 (-)

Homology

• Human Ortholog
  SLC60A2, solute carrier family 60 member 2

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SLC60A2, solute carrier family 60 member 2
  
• Synonyms
  KIAA1919, MFSD4B, NaGLT1
• Links
  HGNC:21053

  NCBI Gene ID: 91749

  UniProt: Q5TF39

  
  
• Chr Location
  6q21; chr6:111259327-111445354 (+)  GRCh38

---

• MGI Vertebrate Homology
  Slc60a2-ps2 stringent orthology
  1 human;1 mouse;1 zebrafish
  
• HCOP
  vertebrate homology predictions: SLC60A2

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  2 involving Slc60a2-ps2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  9 strains or lines available

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• CCDS
  CCDS48540.1

• Ensembl
  ENSMUSG00000071335 (Evidence), ENSMUSG00000121339 (Evidence)
• NCBI Gene
  100041085

Representative Sequences			Length	Strain/Species
genomic	100041085	NCBI Gene Model | MGI Sequence Detail	13247	C57BL/6J
transcript	NR_160808	RefSeq | MGI Sequence Detail	1787	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:3781307, MGI:6280697, MGI:8348346, MGI:8348350, MGI:8348403

References

• Summaries
  All 20

  Phenotypes 7
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for Slc60a2-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97351	Chr10:39836239-39836279 (-)	-110 bp
Tssr97350	Chr10:39836191-39836229 (-)	-61 bp
Tssr97349	Chr10:39836168-39836183 (-)	-27 bp
Tssr97348	Chr10:39836140-39836158 (-)	0 bp