Vmn2r-ps111 Pseudogene Detail

Summary

• Symbol
  Vmn2r-ps111
• Name
  vomeronasal 2, receptor, pseudogene 111

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3761530
  NCBI Gene: 100125242
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:51666234-51669750 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 26.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3761530	pseudogene	Chr14:51614805-51669750 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005547	lincRNA gene	Chr14:45347633-45352452 (+)
A/J	MGP_AJ_G0005532	lincRNA gene	Chr14:44107731-44111172 (+)
AKR/J	MGP_AKRJ_G0005511	lincRNA gene	Chr14:45731660-45734943 (+)
BALB/cJ	MGP_BALBcJ_G0005514	lincRNA gene	Chr14:44196670-44200111 (+)
C3H/HeJ	MGP_C3HHeJ_G0007034	lincRNA gene	Chr7:4260289-4260492 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005670	lincRNA gene	Chr14:47262219-47339871 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005039	lincRNA gene	Chr14:43377031-43450931 (+)
CAST/EiJ	MGP_CASTEiJ_G0005404	lincRNA gene	Chr14:42655282-42712970 (+)
CBA/J	MGP_CBAJ_G0005450	lincRNA gene	Chr14:48673838-48677256 (+)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0005550	lincRNA gene	Chr14:45872572-45882874 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005476	lincRNA gene	Chr14:48255419-48271058 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005669	lincRNA gene	Chr14:45167342-45170783 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0005272	lincRNA gene	Chr14:41362342-41412011 (-)
WSB/EiJ	MGP_WSBEiJ_G0005454	lincRNA gene	Chr14:45434228-45437668 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Vmn2r-ps111
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000089761 (Evidence), ENSMUSG00000115374 (Evidence)
• NCBI Gene
  100125242

Representative Sequences			Length	Strain/Species
genomic	100125242	NCBI Gene Model | MGI Sequence Detail	3517	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:125082 Young JM, et al., V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 2007 May;23(5):212-5