Vmn2r-ps3 Pseudogene Detail

Summary

• Symbol
  Vmn2r-ps3
• Name
  vomeronasal 2, receptor, pseudogene 3

• Feature Type
  pseudogene
• IDs
  MGI:3757653
  NCBI Gene: 100124546
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:63960452-63963031 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 30.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  15 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3757653	pseudogene	Chr3:63960452-63963035 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0040274	pseudogene	Chr3:61229437-61232037 (-)
AKR/J	MGP_AKRJ_G0040211	pseudogene	Chr3:62457161-62458323 (-)
BALB/cJ	MGP_BALBcJ_G0040276	pseudogene	Chr3:60988233-60994172 (-)
C3H/HeJ	MGP_C3HHeJ_G0039911	pseudogene	Chr3:62679381-62680364 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040866	pseudogene	Chr3:65407083-65409662 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039877	pseudogene	Chr3:67538515-67545310 (-)
DBA/2J	MGP_DBA2J_G0040075	pseudogene	Chr3:60646981-60647964 (-)
FVB/NJ	MGP_FVBNJ_G0040029	pseudogene	Chr3:59445684-59448280 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0040027	pseudogene	Chr3:72005785-72008421 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040966	pseudogene	Chr3:62381300-62383862 (-)
PWK/PhJ	MGP_PWKPhJ_G0038686	pseudogene	Chr3:60329541-61397862 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Vmn2r-ps3
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Vmn2r-ps3
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000090303 (Evidence)
• NCBI Gene
  100124546

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090303	Ensembl Gene Model | MGI Sequence Detail	2580	C57BL/6J
transcript	ENSMUST00000176077	Ensembl | MGI Sequence Detail	1101	Not Applicable

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426