Gm11735 Pseudogene Detail

Summary

• Symbol
  Gm11735
• Name
  predicted gene 11735

• Feature Type
  pseudogene
• IDs
  MGI:3713525
  NCBI Gene: 634720
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:116629888-116640659 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 81.49 cM

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3713525	pseudogene	Chr11:116628630-116642384 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0040008	pseudogene	Chr11:115598119-115607675 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0039987	pseudogene	Chr11:115990908-116000545 (-)
C3H/HeJ	MGP_C3HHeJ_G0039632	pseudogene	Chr11:119394981-119404261 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038742	pseudogene	Chr11:120787409-120818728 (-)
CBA/J	MGP_CBAJ_G0039601	pseudogene	Chr11:129506145-129515272 (-)
DBA/2J	MGP_DBA2J_G0039797	pseudogene	Chr11:115020811-115030296 (-)
FVB/NJ	MGP_FVBNJ_G0039764	pseudogene	Chr11:114535187-114574301 (-)
LP/J	MGP_LPJ_G0039835	pseudogene	Chr11:121275320-121284438 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0038420	pseudogene	Chr11:116353810-116363219 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038146	pseudogene	Chr11:119478868-119504067 (-)
WSB/EiJ	MGP_WSBEiJ_G0038962	pseudogene	Chr11:119668905-119707208 (-)

Homology

• Gene Tree
  Gm11735
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000078586 (Evidence)
• NCBI Gene
  634720

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078586	Ensembl Gene Model | MGI Sequence Detail	10772	C57BL/6J
transcript	ENSMUST00000106377	Ensembl | MGI Sequence Detail	1581	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11735:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr111979	Chr11:116640734-116640764 (-)	-90 bp