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Pramef20 Gene Detail
Summary
  • Symbol
    Pramef20
  • Name
    PRAME family member 20
  • Synonyms
    EG627009, Gm13125
  • Feature Type
    protein coding gene
  • IDs
    MGI:3712553
    NCBI Gene: 627009
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr4:144372760-144377933 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 77.98 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    95 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3712553
protein coding gene Chr4:144372760-144377933 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029089
protein coding gene Chr4:147730848-147737035 (-)
A/J MGP_AJ_G0029056
protein coding gene Chr4:141455740-141461443 (-)
AKR/J MGP_AKRJ_G0029004
protein coding gene Chr4:145434043-145441611 (-)
BALB/cJ MGP_BALBcJ_G0029071
protein coding gene Chr4:142103341-142114560 (-)
C3H/HeJ MGP_C3HHeJ_G0028790
protein coding gene Chr4:145873246-145887893 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029516
protein coding gene Chr4:152733007-152739600 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0028206
protein coding gene Chr4:143950604-143961395 (-)
CBA/J MGP_CBAJ_G0028754
protein coding gene Chr4:157481038-157498546 (-)
DBA/2J MGP_DBA2J_G0028902
protein coding gene Chr4:141681239-141689936 (-)
FVB/NJ MGP_FVBNJ_G0028864
protein coding gene Chr4:140817736-140823278 (-)
LP/J MGP_LPJ_G0028993
protein coding gene Chr4:147789485-147796975 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028894
protein coding gene Chr4:161068182-161077572 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029553
protein coding gene Chr4:145897739-145902776 (-)
PWK/PhJ MGP_PWKPhJ_G0027926
protein coding gene Chr4:138158906-138163243 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027760
protein coding gene Chr4:141171981-141178595 (-)
WSB/EiJ MGP_WSBEiJ_G0028285
protein coding gene Chr4:146162493-146169126 (-)



Homology
more
  • Human Ortholog
    PRAMEF20, PRAME family member 20
  • Vertebrate Orthologs
    5
  • Human Ortholog
    PRAMEF20, PRAME family member 20
    Orthology source: HomoloGene
  • Synonyms
    PRAMEF21
  • Links
    NCBI Gene ID: 645425
    neXtProt AC: NX_Q5VT98
    UniProt: Q5VT98

  • Chr Location
    1p36.21; chr1:13410450-13421328 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 627009 NCBI Gene Model | MGI Sequence Detail 5174 C57BL/6J ±  kb
transcript NM_001115077 RefSeq | MGI Sequence Detail 1434 C57BL/6  
polypeptide NP_001108549 RefSeq | MGI Sequence Detail 477 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR032675 Leucine-rich repeat domain superfamily
    IPR026271 PRAME family
Molecular
Reagents
less

  • Microarray probesets 1
Other
Accession IDs
less
MGI:3643657
References
more
  • Summaries
    All 20
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
01/07/2020
MGI 6.14
The Jackson Laboratory