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Ly6c2
Gene Detail
Symbol

Name
ID
Member of
Ly6c2
lymphocyte antigen 6 complex, locus C2
MGI:3712069
Ly6 cluster
Feature Type
protein coding gene
Genetic Map
Chromosome 15
34.29 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr15:75108158-75111970 bp, - strand
From VEGA annotation of GRCm38

  3813 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:113718  Vertebrate Homology Class
7 mouse; 6 rat

Gene Tree: Ly6c2

Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Radiation induced(1)
Genomic Mutations involving Ly6c2 (1)
Incidental mutations (data from Mutagenetix )
Interactions
Ly6c2 interacts with 45 markers (Mir18b, Mir30c-1, Mir30c-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Component anchored component of membrane, membrane, ...
Expression
cDNA source data(20)
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(20) cDNA(20)
Other database
links
VEGA Gene ModelOTTMUSG00000045164 (Evidence)
Ensembl Gene ModelENSMUSG00000022584 (Evidence)
Entrez Gene100041546 (Evidence)
UniGene482110
Consensus CDS ProjectCCDS49638.1
International Mouse Knockout Project StatusLy6c2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000045164 VEGA Gene Model | MGI Sequence Detail 3813 C57BL/6J ±  kb
transcript OTTMUST00000118681 VEGA | MGI Sequence Detail 822 Not Applicable 
polypeptide OTTMUSP00000066239 VEGA | MGI Sequence Detail 131 Not Applicable 

For the selected sequences
All sequences(17) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(109 from dbSNP Build 137)    SNPs within 2kb including multiple locations(187)
Protein-related
information
ResourceIDDescription
InterPro IPR001526 CD59 antigen
InterPro IPR018363 CD59 antigen, conserved site
InterPro IPR016054 Ly-6 antigen / uPA receptor -like
Protein Ontology PR:000002980 lymphocyte antigen 6C2
References
(Earliest) J:35255 Takikawa O, et al., Multiple expression of Ly-6C and accumulation of a Ly-6C pre-mRNA in activated macrophages involved in rejection of an allografted tumor. Biochem Biophys Res Commun. 1996 Sep 4;226(1):247-53
(Latest) J:191745 Ramachandran P, et al., Differential Ly-6C expression identifies the recruited macrophage phenotype, which orchestrates the regression of murine liver fibrosis. Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):E3186-95
All references(15)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory