Ccl21e Gene Detail

Summary

• Symbol
  Ccl21e
• Name
  C-C motif chemokine ligand 21E
• Synonyms
  Gm10591

• Feature Type
  protein coding gene
• IDs
  MGI:3711256
  NCBI Gene: 100504239
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:42612123-42613253 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 22.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3711256	protein coding gene	Chr4:42612121-42613253 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195003175	protein coding gene	Chr4:39118249-39119382 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180024626	protein coding gene	Chr4:38705064-38706197 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215015702	protein coding gene	Chr4:38728648-38729780 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185006228	protein coding gene	Chr4:38871460-38872593 (+)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230039964	protein coding gene	Chr4:42248428-42249561 (+)
LP/J	ENSMUSG00230040232	protein coding gene	Chr4:42459739-42460871 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225006733	protein coding gene	Chr4:46131815-46132948 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  CCL21, C-C motif chemokine ligand 21

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  CCL21, C-C motif chemokine ligand 21
  
• Synonyms
  6Ckine, CKb9, ECL, SCYA21, SLC, TCA4
• Links
  HGNC:10620

  NCBI Gene ID: 6366

  UniProt: O00585

  
  
• Chr Location
  9p13.3; chr9:34709005-34710167 (-)  GRCh38

---

• MGI Vertebrate Homology
  Ccl21e stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: CCL21
• Gene Tree
  Ccl21e
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically and radiation induced
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Ccl21e
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  2
• CCDS
  CCDS51158.1

• Ensembl
  ENSMUSG00000096596 (Evidence)
• NCBI Gene
  100504239

Representative Sequences			Length	Strain/Species
genomic	100504239	NCBI Gene Model | MGI Sequence Detail	1131	C57BL/6J
transcript	NM_001193668	RefSeq | MGI Sequence Detail	867	C57BL/6
polypeptide	NP_001180597	RefSeq | MGI Sequence Detail	133	C57BL/6

Other
Accession IDs

MGI:7526401

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;