Hmgn2l6 Pseudogene Detail

Summary

• Symbol
  Hmgn2l6
• Name
  high-mobility group nucleosomal binding domain 2-like 6

• Feature Type
  pseudogene
• IDs
  MGI:3708112
  NCBI Gene: 633596
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:140653131-140653397 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 62.61 cM

Strain
Comparison

• SNPs within 2kb
  26 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708112	pseudogene	ChrX:140644095-140653500 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014877	pseudogene	ChrX:139362021-139362287 (-)
A/J	MGP_AJ_G0014870	pseudogene	ChrX:138759148-138759414 (-)
AKR/J	MGP_AKRJ_G0014812	pseudogene	ChrX:143172677-143174555 (-)
BALB/cJ	MGP_BALBcJ_G0014826	pseudogene	ChrX:137003289-137003555 (-)
C3H/HeJ	MGP_C3HHeJ_G0014662	pseudogene	ChrX:139481261-139481527 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015311	pseudogene	ChrX:143378951-143379217 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012955	pseudogene	ChrX:130372913-130373174 (-)
CAST/EiJ	MGP_CASTEiJ_G0014275	pseudogene	ChrX:120197648-120197914 (-)
CBA/J	MGP_CBAJ_G0014651	pseudogene	ChrX:147843047-147843313 (-)
DBA/2J	MGP_DBA2J_G0014734	pseudogene	ChrX:137827925-137828191 (-)
FVB/NJ	MGP_FVBNJ_G0014717	pseudogene	ChrX:137058333-137058599 (-)
LP/J	MGP_LPJ_G0014831	pseudogene	ChrX:140306606-140306872 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014761	pseudogene	ChrX:155439846-155440112 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015295	pseudogene	ChrX:138675851-138676117 (-)
PWK/PhJ	MGP_PWKPhJ_G0014076	pseudogene	ChrX:117033546-117033812 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009728	pseudogene	Chr1:106419442-106419708 (+)
WSB/EiJ	MGP_WSBEiJ_G0014355	pseudogene	ChrX:137085771-137086037 (-)

Homology

• Gene Tree
  Hmgn2l6
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000085466 (Evidence)
• NCBI Gene
  633596

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085466	Ensembl Gene Model | MGI Sequence Detail	267	C57BL/6J
transcript	ENSMUST00000115986	Ensembl | MGI Sequence Detail	267	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Hmgn2l6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164272	ChrX:140653490-140653499 (-)	-98 bp