Gm15344 Gene Detail

Summary

• Symbol
  Gm15344
• Name
  predicted gene 15344

• Feature Type
  lncRNA gene
• IDs
  MGI:3708098
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr10:86527983-86528959 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 43.05 cM

Strain
Comparison

• SNPs within 2kb
  15 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708098	lncRNA gene	Chr10:86527983-86528959 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015139	unclassified non-coding RNA gene	Chr10:87670198-87671174 (-)
A/J	MGP_AJ_G0015113	unclassified non-coding RNA gene	Chr10:84773260-84774236 (-)
AKR/J	MGP_AKRJ_G0015076	unclassified non-coding RNA gene	Chr10:87152395-87153371 (-)
BALB/cJ	MGP_BALBcJ_G0015076	unclassified non-coding RNA gene	Chr10:85035630-85036606 (-)
C3H/HeJ	MGP_C3HHeJ_G0014899	unclassified non-coding RNA gene	Chr10:87158222-87159198 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015532	unclassified non-coding RNA gene	Chr10:90640119-90641095 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013278	unclassified non-coding RNA gene	Chr10:80568546-80569523 (-)
CAST/EiJ	MGP_CASTEiJ_G0014453	unclassified non-coding RNA gene	Chr10:87042465-87043442 (-)
CBA/J	MGP_CBAJ_G0014878	unclassified non-coding RNA gene	Chr10:94406367-94407343 (-)
DBA/2J	MGP_DBA2J_G0014971	unclassified non-coding RNA gene	Chr10:83876370-83877346 (-)
FVB/NJ	MGP_FVBNJ_G0014982	unclassified non-coding RNA gene	Chr10:83141559-83142537 (-)
LP/J	MGP_LPJ_G0015053	unclassified non-coding RNA gene	Chr10:88362747-88363723 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015009	unclassified non-coding RNA gene	Chr10:95977233-95978209 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015571	unclassified non-coding RNA gene	Chr10:87003094-87004070 (-)
PWK/PhJ	MGP_PWKPhJ_G0014245	unclassified non-coding RNA gene	Chr10:83882468-83883446 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014033	unclassified non-coding RNA gene	Chr10:85725587-85726566 (-)
WSB/EiJ	MGP_WSBEiJ_G0014556	unclassified non-coding RNA gene	Chr10:86958114-86959091 (-)

Homology

• Gene Tree
  Gm15344
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15344
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000084899 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084899	Ensembl Gene Model | MGI Sequence Detail	977	C57BL/6J
transcript	ENSMUST00000152600	Ensembl | MGI Sequence Detail	421	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm15344:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98777	Chr10:86529961-86529989 (-)	-1,016 bp
Tssr98776	Chr10:86529873-86529888 (-)	-922 bp
Tssr98775	Chr10:86529815-86529835 (-)	-866 bp
Tssr98774	Chr10:86529342-86529373 (-)	-399 bp
Tssr98773	Chr10:86529314-86529325 (-)	-361 bp
Tssr98772	Chr10:86529270-86529292 (-)	-322 bp