Gm15472 Gene Detail

Summary

• Symbol
  Gm15472
• Name
  predicted gene 15472

• Feature Type
  lncRNA gene
• IDs
  MGI:3707328
  NCBI Gene: 100503170
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:103770482-103771739 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 45.52 cM

Strain
Comparison

• SNPs within 2kb
  40 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3707328	lncRNA gene	Chr3:103770482-103771739 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036975	sense intronic lncRNA gene	Chr3:105159156-105160416 (+)
A/J	MGP_AJ_G0036963	sense intronic lncRNA gene	Chr3:101812385-101813644 (+)
AKR/J	MGP_AKRJ_G0036910	sense intronic lncRNA gene	Chr3:104292055-104293316 (+)
BALB/cJ	MGP_BALBcJ_G0036954	sense intronic lncRNA gene	Chr3:101578500-101579782 (+)
C3H/HeJ	MGP_C3HHeJ_G0036640	sense intronic lncRNA gene	Chr3:104662522-104663781 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037466	sense intronic lncRNA gene	Chr3:109051150-109052407 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034521	sense intronic lncRNA gene	Chr3:97934292-97936232 (+)
CAST/EiJ	MGP_CASTEiJ_G0035829	sense intronic lncRNA gene	Chr3:103778819-103780052 (+)
CBA/J	MGP_CBAJ_G0036615	sense intronic lncRNA gene	Chr3:112794447-112795706 (+)
DBA/2J	MGP_DBA2J_G0036790	sense intronic lncRNA gene	Chr3:101055591-101056848 (+)
FVB/NJ	MGP_FVBNJ_G0036740	sense intronic lncRNA gene	Chr3:98981004-98982259 (+)
LP/J	MGP_LPJ_G0036838	sense intronic lncRNA gene	Chr3:106501013-106502273 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036748	sense intronic lncRNA gene	Chr3:118904705-118905987 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037584	sense intronic lncRNA gene	Chr3:103848529-103849811 (+)
PWK/PhJ	MGP_PWKPhJ_G0035521	sense intronic lncRNA gene	Chr3:100826747-100828028 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035333	sense intronic lncRNA gene	Chr3:101916579-101917785 (+)
WSB/EiJ	MGP_WSBEiJ_G0036029	sense intronic lncRNA gene	Chr3:104401079-104402361 (+)

Homology

• Gene Tree
  Gm15472
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15472
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000084760 (Evidence)
• NCBI Gene
  100503170

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084760	Ensembl Gene Model | MGI Sequence Detail	1258	C57BL/6J
transcript	ENSMUST00000141652	Ensembl | MGI Sequence Detail	847	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15472:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31026	Chr3:103770513-103770516 (+)	33 bp