Zfp36l1-ps Pseudogene Detail

Summary

• Symbol
  Zfp36l1-ps
• Name
  zinc finger protein 36, C3H type-like 1, pseudogene
• Synonyms
  Gm14556

• Feature Type
  pseudogene
• IDs
  MGI:3707318
  NCBI Gene: 100417737
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:37269605-37270503 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 22.44 cM

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3707318	pseudogene	ChrX:37269486-37270700 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010923	pseudogene	Chr12:80448607-80449501 (-)
A/J	MGP_AJ_G0010930	pseudogene	Chr12:77542646-77543540 (-)
AKR/J	MGP_AKRJ_G0010883	pseudogene	Chr12:79649455-79650349 (-)
BALB/cJ	MGP_BALBcJ_G0010903	pseudogene	Chr12:77795058-77795952 (-)
C3H/HeJ	MGP_C3HHeJ_G0010799	pseudogene	Chr12:80125085-80125979 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011174	pseudogene	Chr12:82810339-82811233 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009786	pseudogene	Chr12:74551241-74552135 (-)
CAST/EiJ	MGP_CASTEiJ_G0010632	pseudogene	Chr12:74980764-74981658 (-)
CBA/J	MGP_CBAJ_G0010774	pseudogene	Chr12:86047334-86048228 (-)
DBA/2J	MGP_DBA2J_G0010821	pseudogene	Chr12:77163685-77164579 (-)
FVB/NJ	MGP_FVBNJ_G0010834	pseudogene	Chr12:75975892-75976786 (-)
LP/J	MGP_LPJ_G0010905	pseudogene	Chr12:80381533-80382427 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010815	pseudogene	Chr12:89077312-89078206 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011159	pseudogene	Chr12:79176953-79177847 (-)
PWK/PhJ	MGP_PWKPhJ_G0013617	pseudogene	ChrX:21082666-21083692 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010334	pseudogene	Chr12:73664148-73665042 (-)
WSB/EiJ	MGP_WSBEiJ_G0010676	pseudogene	Chr12:79799600-79800494 (-)

Homology

• Gene Tree
  Zfp36l1-ps
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000080942 (Evidence)
• NCBI Gene
  100417737

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080942	Ensembl Gene Model | MGI Sequence Detail	899	C57BL/6J
transcript	ENSMUST00000118349	Ensembl | MGI Sequence Detail	899	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Zfp36l1-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160777	ChrX:37268761-37268768 (+)	-840 bp
Tssr160778	ChrX:37269474-37269490 (+)	-123 bp