Gm15385 Pseudogene Detail

Summary

• Symbol
  Gm15385
• Name
  predicted gene 15385

• Feature Type
  pseudogene
• IDs
  MGI:3705807
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:74503569-74529359 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 38.23 cM

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705807	pseudogene	ChrX:74503569-74529359 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040688	pseudogene	ChrX:71304266-71332888 (+)
A/J	MGP_AJ_G0040687	pseudogene	ChrX:71528300-71557807 (+)
AKR/J	MGP_AKRJ_G0040610	pseudogene	ChrX:73378382-73400725 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0040313	pseudogene	ChrX:71809712-71831514 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0041376	pseudogene	ChrX:73596572-73626342 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0039356	pseudogene	ChrX:57131307-57150833 (+)
CBA/J	MGP_CBAJ_G0040279	pseudogene	ChrX:75551536-75586508 (+)
DBA/2J	MGP_DBA2J_G0040495	pseudogene	ChrX:70980501-71004543 (+)
FVB/NJ	MGP_FVBNJ_G0040413	pseudogene	ChrX:70307160-70332827 (+)
LP/J	MGP_LPJ_G0040533	pseudogene	ChrX:72105328-72147058 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0041426	pseudogene	ChrX:71178897-71202896 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0039601	pseudogene	ChrX:70380429-70406387 (+)

Homology

• Gene Tree
  Gm15385
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000083093 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083093	Ensembl Gene Model | MGI Sequence Detail	25791	C57BL/6J
transcript	ENSMUST00000118725	Ensembl | MGI Sequence Detail	743	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;