Gm15239 Gene Detail

Summary

• Symbol
  Gm15239
• Name
  predicted gene 15239

• Feature Type
  lncRNA gene
• IDs
  MGI:3705189
  NCBI Gene: 102641779
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:166144451-166147417 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 78.33 cM

Strain
Comparison

• SNPs within 2kb
  20 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705189	lncRNA gene	ChrX:166144451-166147417 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004752	antisense lncRNA gene	ChrX:165540688-165543638 (+)
A/J	MGP_AJ_G0004730	antisense lncRNA gene	ChrX:164671620-164674564 (+)
AKR/J	MGP_AKRJ_G0004713	antisense lncRNA gene	ChrX:169954685-169957637 (+)
BALB/cJ	MGP_BALBcJ_G0004714	antisense lncRNA gene	ChrX:162622993-162625945 (+)
C3H/HeJ	MGP_C3HHeJ_G0004662	antisense lncRNA gene	ChrX:165842742-165845708 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004864	antisense lncRNA gene	ChrX:170341202-170344164 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004300	antisense lncRNA gene	ChrX:155474926-155477789 (+)
CAST/EiJ	MGP_CASTEiJ_G0004619	antisense lncRNA gene	ChrX:144720207-144723154 (+)
CBA/J	MGP_CBAJ_G0004656	antisense lncRNA gene	ChrX:175298362-175301338 (+)
DBA/2J	MGP_DBA2J_G0004672	antisense lncRNA gene	ChrX:163478624-163481580 (+)
FVB/NJ	MGP_FVBNJ_G0004690	antisense lncRNA gene	ChrX:162617188-162620126 (+)
LP/J	MGP_LPJ_G0004753	antisense lncRNA gene	ChrX:166605098-166608038 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004675	antisense lncRNA gene	ChrX:183988167-183991117 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004864	antisense lncRNA gene	ChrX:164984689-164987665 (+)
PWK/PhJ	MGP_PWKPhJ_G0004570	antisense lncRNA gene	ChrX:141442382-141445307 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004504	antisense lncRNA gene	ChrX:145249871-145252750 (+)
WSB/EiJ	MGP_WSBEiJ_G0004662	antisense lncRNA gene	ChrX:162832120-162835068 (+)

Homology

• Gene Tree
  Gm15239
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000086258 (Evidence)
• NCBI Gene
  102641779

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086258	Ensembl Gene Model | MGI Sequence Detail	2967	C57BL/6J
transcript	ENSMUST00000150690	Ensembl | MGI Sequence Detail	603	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;