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Hotairm1 Gene Detail
Summary
  • Symbol
    Hotairm1
  • Name
    Hoxa transcript antisense RNA, myeloid-specific 1
  • Synonyms
    Gm15051, Hoxaas1
Location &
Maps
more
  • Sequence Map
    Chr6:52135504-52139000 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 25.40 cM
Strain
Comparison
more
  • SNPs within 2kb
    1 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3705155
 antisense lncRNA gene Chr6:52133882-52139099 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004269
 antisense lncRNA gene Chr6:51390001-51397537 (+)
A/J MGP_AJ_G0004247
 antisense lncRNA gene Chr6:48992414-48997639 (+)
AKR/J MGP_AKRJ_G0004228
 antisense lncRNA gene Chr6:50696293-50703100 (+)
BALB/cJ MGP_BALBcJ_G0004234
 antisense lncRNA gene Chr6:49351746-49356988 (+)
C3H/HeJ MGP_C3HHeJ_G0004182
 antisense lncRNA gene Chr6:50706583-50711822 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004383
 antisense lncRNA gene Chr6:52529877-52535099 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003856
 antisense lncRNA gene Chr6:46640457-46645740 (+)
CAST/EiJ MGP_CASTEiJ_G0004144
 antisense lncRNA gene Chr6:50518623-50523899 (+)
CBA/J MGP_CBAJ_G0004176
 antisense lncRNA gene Chr6:54725644-54730852 (+)
DBA/2J MGP_DBA2J_G0004192
 antisense lncRNA gene Chr6:48915397-48920605 (+)
FVB/NJ MGP_FVBNJ_G0004208
 antisense lncRNA gene Chr6:48525150-48530665 (+)
LP/J MGP_LPJ_G0004270
 antisense lncRNA gene Chr6:51371222-51382307 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004198
 antisense lncRNA gene Chr6:57360828-57366852 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004380
 antisense lncRNA gene Chr6:50622402-50627627 (+)
PWK/PhJ MGP_PWKPhJ_G0004097
 antisense lncRNA gene Chr6:48536961-48542348 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004041
 antisense lncRNA gene Chr6:49960273-49965548 (+)
WSB/EiJ MGP_WSBEiJ_G0004180
 antisense lncRNA gene Chr6:50638709-50643938 (+)



Homology
more
  • Human Ortholog
    HOTAIRM1, HOXA transcript antisense RNA, myeloid-specific 1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    HOTAIRM1, HOXA transcript antisense RNA, myeloid-specific 1
  • Synonyms
    HOXA1-AS1, HOXA-AS1, NCRNA00179
  • Links
    NCBI Gene ID: 100506311

  • Chr Location
    chr7:27095647-27100265 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 105242658 NCBI Gene Model | MGI Sequence Detail 3497 C57BL/6J ±  kb
transcript NR_131181 RefSeq | MGI Sequence Detail 253 ZRU/MplStud  
For the selected sequence
References
more
  • Summaries
    All 19
    Phenotypes 12
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:322498 Chen W, et al., Long Noncoding RNA HOTAIRM1 Promotes Immunosuppression in Sepsis by Inducing T Cell Exhaustion. J Immunol. 2022 Feb 1;208(3):618-632
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory