Gm11906 Gene Detail

Summary

• Symbol
  Gm11906
• Name
  predicted gene 11906

• Feature Type
  lncRNA gene
• IDs
  MGI:3705114
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:24966517-25271099 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 10.53 cM

Strain
Comparison

• SNPs within 2kb
  980 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705114	lncRNA gene	Chr4:24966517-25271099 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015537	unclassified non-coding RNA gene	Chr4:22086642-22375911 (+)
A/J	MGP_AJ_G0015514	unclassified non-coding RNA gene	Chr4:21434753-21734678 (+)
AKR/J	MGP_AKRJ_G0015478	unclassified non-coding RNA gene	Chr4:21922951-22215138 (+)
BALB/cJ	MGP_BALBcJ_G0015476	unclassified non-coding RNA gene	Chr4:21503807-21788841 (+)
C3H/HeJ	MGP_C3HHeJ_G0015299	unclassified non-coding RNA gene	Chr4:22108453-22399595 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015930	unclassified non-coding RNA gene	Chr4:23014470-23353610 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013665	unclassified non-coding RNA gene	Chr4:19914063-20186507 (+)
CAST/EiJ	MGP_CASTEiJ_G0014853	unclassified non-coding RNA gene	Chr4:21804441-22116832 (+)
CBA/J	MGP_CBAJ_G0015280	unclassified non-coding RNA gene	Chr4:23674729-23964074 (+)
DBA/2J	MGP_DBA2J_G0015374	unclassified non-coding RNA gene	Chr4:21330160-21630037 (+)
FVB/NJ	MGP_FVBNJ_G0015381	unclassified non-coding RNA gene	Chr4:20982117-21269026 (+)
LP/J	MGP_LPJ_G0015453	unclassified non-coding RNA gene	Chr4:22217915-22486133 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015405	unclassified non-coding RNA gene	Chr4:25143655-25489383 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015971	unclassified non-coding RNA gene	Chr4:21878787-22187213 (+)
PWK/PhJ	MGP_PWKPhJ_G0014639	unclassified non-coding RNA gene	Chr4:21066313-21314598 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014427	unclassified non-coding RNA gene	Chr4:21655766-21952936 (+)
WSB/EiJ	MGP_WSBEiJ_G0014959	unclassified non-coding RNA gene	Chr4:21829120-22132792 (+)

Homology

• Gene Tree
  Gm11906
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085885 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085885	Ensembl Gene Model | MGI Sequence Detail	304583	C57BL/6J
transcript	ENSMUST00000124792	Ensembl | MGI Sequence Detail	680	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11906:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36642	Chr4:24966428-24966502 (+)	-52 bp
Tssr36643	Chr4:24972464-24972469 (+)	5,950 bp
Tssr36644	Chr4:24972508-24972521 (+)	5,998 bp