Gm10053 Pseudogene Detail

Summary

• Symbol
  Gm10053
• Name
  predicted gene 10053

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3704493
  NCBI Gene: 672195
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr19:24875686-24876631 bp, + strand
• From Ensembl annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 19.85 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  27 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704493	pseudogene	Chr19:24875626-24876875 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0031950	protein coding gene	Chr7:27339774-27340472 (+)
A/J	MGP_AJ_G0031928	protein coding gene	Chr7:26671058-26671988 (+)
AKR/J	MGP_AKRJ_G0031860	protein coding gene	Chr7:27348062-27348763 (+)
BALB/cJ	MGP_BALBcJ_G0031935	protein coding gene	Chr7:26823989-26824690 (+)
C3H/HeJ	MGP_C3HHeJ_G0030425	protein coding gene	Chr6:49053175-49055258 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0027211	protein coding gene	Chr5:43510157-43515597 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0031620	protein coding gene	Chr7:29489325-29490026 (+)
DBA/2J	MGP_DBA2J_G0022388	protein coding gene	Chr16:12404576-12405493 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0031852	protein coding gene	Chr7:27659958-27660656 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0031765	protein coding gene	Chr7:28980956-28981657 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031196	protein coding gene	Chr6:48949949-48951813 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm10053
  

Expression

• Other Mouse Links
  GEO
  Expression Atlas

Interactions

• Gm10053 interacts with 89 markers (Mir25, Mir98, Mir101a, ...) View All

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000058927 (Evidence)
• NCBI Gene
  672195

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000058927	Ensembl Gene Model | MGI Sequence Detail	946	C57BL/6J
transcript	ENSMUST00000073080	Ensembl | MGI Sequence Detail	946	Not Applicable
polypeptide	ENSMUSP00000072829	Ensembl | MGI Sequence Detail	105	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, 2/14/1995;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10053:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155627	Chr19:24875621-24875639 (+)	-56 bp
Tssr155628	Chr19:24875662-24875667 (+)	-21 bp
Tssr155629	Chr19:24875679-24875689 (+)	-2 bp