Amd-ps3 Pseudogene Detail

Summary

• Symbol
  Amd-ps3
• Name
  S-adenosylmethionine decarboxylase, pseudogene 3
• Synonyms
  ENSMUSG00000060096

• Feature Type
  pseudogene
• IDs
  MGI:3704487
  NCBI Gene: 100043304
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:64581756-64582760 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 37.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704487	pseudogene	Chr18:64581196-64583085 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014121	pseudogene	Chr9:22218652-22219953 (-)
A/J	MGP_AJ_G0013523	pseudogene	Chr6:67937847-67939124 (+)
AKR/J	MGP_AKRJ_G0014875	pseudogene	ChrX:157132620-157134081 (+)
BALB/cJ	MGP_BALBcJ_G0011432	pseudogene	Chr18:61868024-61870237 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012942	pseudogene	Chr4:51581040-51582901 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012375	pseudogene	Chr9:20707239-20708471 (-)
CAST/EiJ	MGP_CASTEiJ_G0014333	pseudogene	ChrX:132505027-132506323 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0014071	pseudogene	Chr9:22405312-22406613 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0012945	pseudogene	Chr4:49426805-49428082 (-)
PWK/PhJ	MGP_PWKPhJ_G0012853	pseudogene	Chr6:66150097-66151489 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013179	pseudogene	Chr9:22194775-22196075 (-)
WSB/EiJ	MGP_WSBEiJ_G0013637	pseudogene	Chr9:21876784-21878085 (-)

Homology

• Gene Tree
  Amd-ps3
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000060096 (Evidence)
• NCBI Gene
  100043304

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000060096	Ensembl Gene Model | MGI Sequence Detail	1005	C57BL/6J
transcript	ENSMUST00000072796	Ensembl | MGI Sequence Detail	1005	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;