Hdac1-ps Pseudogene Detail

Summary

• Symbol
  Hdac1-ps
• Name
  histone deacetylase 1, pseudogene
• Synonyms
  EG15181, Gm10093

• Feature Type
  pseudogene
• IDs
  MGI:3704479
  NCBI Gene: 15181
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:78799011-78800454 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 49.28 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  171 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704479	pseudogene	Chr17:78798994-78800970 (+)
129S1/SvImJ	ENSMUSG00200024713	pseudogene	Chr17:74170614-74172057 (+)
A/J	ENSMUSG00195028914	pseudogene	Chr17:75525207-75526650 (+)
A/J	ENSMUSG00195054183	pseudogene	Chr19:8415849-8417292 (+)
AKR/J	ENSMUSG00220013946	pseudogene	Chr17:74431586-74433029 (+)
BALB/cJ	ENSMUSG00180005191	pseudogene	Chr17:75235095-75236538 (+)
BALB/cJ	ENSMUSG00180052710	pseudogene	Chr19:8780405-8781848 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215016426	pseudogene	Chr17:74223350-74224793 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017876	protein coding gene	Chr12:72132443-72134227 (-)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205030234	pseudogene	Chr17:74991022-74992465 (+)
FVB/NJ	ENSMUSG00205053666	pseudogene	Chr19:8122613-8124056 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230022654	pseudogene	Chr17:78211528-78212971 (+)
NOD/ShiLtJ	ENSMUSG00190053456	pseudogene	Chr19:7878472-7879915 (+)
NOD/ShiLtJ	ENSMUSG00190010501	pseudogene	Chr17:74274695-74276138 (+)
NZO/HlLtJ	ENSMUSG00225029030	pseudogene	Chr17:80469110-80470553 (+)
PWK/PhJ	ENSLUMG00010005800	pseudogene	Chr17:74138940-74140383 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005010822	pseudogene	Chr17:75195317-75196760 (+)

Homology

• Gene Tree
  Hdac1-ps
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  20 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000061062 (Evidence)
• NCBI Gene
  15181

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000061062	Ensembl Gene Model | MGI Sequence Detail	1444	C57BL/6J
transcript	ENSMUST00000079363	Ensembl | MGI Sequence Detail	1444	Not Applicable

Other
Accession IDs

MGI:3645960, MGI:6362767

References

• Summaries
  All 16
• Earliest
  J:42359 Bartl S, et al., Identification of mouse histone deacetylase 1 as a growth factor-inducible gene. Mol Cell Biol. 1997 Sep;17(9):5033-43
• Latest
  J:386780 Mosley AL, et al., The pancreatic duodenal homeobox-1 protein (Pdx-1) interacts with histone deacetylases Hdac-1 and Hdac-2 on low levels of glucose. J Biol Chem. 2004 Dec 24;279(52):54241-7

TSS for Hdac1-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145895	Chr17:78798978-78798981 (+)	-31 bp