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Trav7n-6 Gene Detail
Summary
  • Symbol
    Trav7n-6
  • Name
    T cell receptor alpha variable 7N-6
  • Synonyms
    ENSMUSG00000072519, Gm10905
Location &
Maps
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  • Sequence Map
    Chr14:53562133-53562665 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.32 cM
  • Mapping Data
    1 experiment
Strain
Comparison
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  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3704442
gene segment Chr14:53562089-53562665 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002540
gene segment Chr14:47001576-47002152 (+)
A/J MGP_AJ_G0002508
gene segment Chr14:45876860-45877436 (+)
AKR/J MGP_AKRJ_G0002496
gene segment Chr14:47520833-47521409 (+)
BALB/cJ MGP_BALBcJ_G0002501
gene segment Chr14:45952137-45952681 (+)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0002228
gene segment Chr14:45092602-45093177 (-)
CAST/EiJ MGP_CASTEiJ_G0002472
gene segment Chr14:44345827-44346403 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0002480
gene segment Chr14:45624016-45624592 (+)
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0002462
gene segment Chr14:50123978-50124554 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002637
gene segment Chr14:46847552-46848128 (+)
PWK/PhJ MGP_PWKPhJ_G0002419
gene segment Chr14:42344653-42345229 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002380
gene segment Chr14:43363608-43364184 (+)
WSB/EiJ no annotation



Homology
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  • Human Ortholog
    TRAV12-3, T cell receptor alpha variable 12-3
  • Vertebrate Orthologs
    6
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV12-3, T cell receptor alpha variable 12-3
  • Synonyms
    TCRAV12S3, TCRAV2S2, TRAV123
  • Links
    NCBI Gene ID: 28672
    UniProt: A0A0B4J271

  • Chr Location
    14q11.2; chr14:21965507-21966061 (+)  GRCh38.p7

Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Interactions
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Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 100126457 NCBI Gene Model | MGI Sequence Detail 533 C57BL/6J ±  kb
polypeptide A0A0B4J1N1 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/14/2022
MGI 6.19
The Jackson Laboratory