About   Help   FAQ
Trav16d-dv11 Gene Detail
Summary
  • Symbol
    Trav16d-dv11
  • Name
    T cell receptor alpha variable 16D-DV11
  • Synonyms
    ENSMUSG00000072535
  • Feature Type
    gene segment
  • IDs
    MGI:3704436
    NCBI Gene: 547329
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr14:53284744-53285278 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.20 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3704436
gene segment Chr14:53284744-53285278 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002544
gene segment Chr14:47026133-47026664 (+)
A/J MGP_AJ_G0002512
gene segment Chr14:45904659-45905190 (+)
AKR/J MGP_AKRJ_G0002507
gene segment Chr14:47933086-47933617 (+)
BALB/cJ MGP_BALBcJ_G0002518
gene segment Chr14:46712113-46712644 (+)
C3H/HeJ MGP_C3HHeJ_G0002482
gene segment Chr14:47656753-47657284 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002660
gene segment Chr14:50087146-50087985 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002227
gene segment Chr14:45003056-45003586 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0002469
gene segment Chr14:50704050-50704581 (+)
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0002492
gene segment Chr14:45216281-45216812 (+)
LP/J MGP_LPJ_G0002545
gene segment Chr14:48130485-48131016 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002465
gene segment Chr14:50164713-50165244 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002639
gene segment Chr14:46880592-46881123 (+)
PWK/PhJ MGP_PWKPhJ_G0002421
gene segment Chr14:42378042-42378573 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002349
gene segment Chr14:42796125-42796656 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV19, T cell receptor alpha variable 19
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV19, T cell receptor alpha variable 19
  • Synonyms
    TCRAV12S1, TCRAV19S1
  • Links
    NCBI Gene ID: 28664
    UniProt: A0A0A6YYK7

  • Chr Location
    14q11.2; chr14:22007629-22008181 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 547329 NCBI Gene Model | MGI Sequence Detail 535 C57BL/6J ±  kb
transcript AK088475 GenBank | ENA | DDBJ | MGI Sequence Detail 1413 NOD  
polypeptide A0A075B617 UniProt | EBI | MGI Sequence Detail 117 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 11
    Gene Ontology 1
  • Earliest
    J:16636 Mao C, et al., T cell receptor alpha-chain repertoire of pathogenic autoantibody-inducing T cells in lupus mice. J Immunol. 1994 Feb 1;152(3):1462-70
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
06/23/2022
MGI 6.20
The Jackson Laboratory