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Gm10642 Gene Detail
Summary
  • Symbol
    Gm10642
  • Name
    predicted gene 10642
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3704338
    NCBI Gene: 100379146
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:70656251-70657862 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 39.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    11 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3704338
lncRNA gene Chr9:70656251-70657862 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035003
protein coding gene Chr9:70763548-70765155 (+)
A/J MGP_AJ_G0034984
protein coding gene Chr9:68288823-68290432 (+)
AKR/J MGP_AKRJ_G0034913
protein coding gene Chr9:69899685-69901294 (+)
BALB/cJ MGP_BALBcJ_G0034976
protein coding gene Chr9:68002256-68003865 (+)
C3H/HeJ MGP_C3HHeJ_G0034685
protein coding gene Chr9:70428738-70430347 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035495
protein coding gene Chr9:72623596-72625205 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032406
protein coding gene Chr9:67824976-67826583 (+)
CAST/EiJ MGP_CASTEiJ_G0034007
protein coding gene Chr9:70700206-70701816 (+)
CBA/J MGP_CBAJ_G0034658
protein coding gene Chr9:75150472-75152081 (+)
DBA/2J MGP_DBA2J_G0034817
protein coding gene Chr9:68029290-68030899 (+)
FVB/NJ MGP_FVBNJ_G0034759
protein coding gene Chr9:67353630-67355607 (+)
LP/J MGP_LPJ_G0034898
protein coding gene Chr9:70993138-70994743 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034800
protein coding gene Chr9:76228906-76230516 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035517
protein coding gene Chr9:70057332-70058941 (+)
PWK/PhJ MGP_PWKPhJ_G0033711
protein coding gene Chr9:68268957-68270632 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033544
protein coding gene Chr9:70352569-70354190 (+)
WSB/EiJ MGP_WSBEiJ_G0034119
protein coding gene Chr9:69958776-69960399 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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  • All Sequences
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000074213 Ensembl Gene Model | MGI Sequence Detail 1612 C57BL/6J ±  kb
transcript ENSMUST00000238671 Ensembl | MGI Sequence Detail 1612 Not Applicable  
polypeptide Q3TWM1 UniProt | EBI | MGI Sequence Detail 71 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 10
    Phenotypes 2
  • Earliest
    J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
  • Latest
    J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/04/2020
MGI 6.15
The Jackson Laboratory