Sap18b Gene Detail

Summary

• Symbol
  Sap18b
• Name
  Sin3A-associated polypeptide 18B
• Synonyms
  Gm10094

• Feature Type
  protein coding gene
• IDs
  MGI:3704317
  NCBI Gene: 100041953
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:96551974-96552762 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 47.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  195 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704317	protein coding gene	Chr8:96551974-96552784 (+)
129S1/SvImJ	ENSMUSG00200014615	protein coding gene	Chr8:90914109-90914902 (+)
A/J	ENSMUSG00195003784	protein coding gene	Chr8:91248985-91249778 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180003805	protein coding gene	Chr8:91151068-91151861 (+)
C3H/HeJ	ENSMUSG00175002562	protein coding gene	Chr8:91193435-91194228 (+)
C57BL/6NJ	ENSMUSG00215001228	protein coding gene	Chr8:90824244-90825032 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210014891	protein coding gene	Chr8:91128864-91129658 (+)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205016920	protein coding gene	Chr8:90238504-90239299 (+)
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190011852	protein coding gene	Chr8:91254664-91255458 (+)
NZO/HlLtJ	ENSMUSG00225009818	protein coding gene	Chr8:104304060-104304848 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Sap18b
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Incidental Mutations
  CvDC
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  23

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas
• Other Vertebrate Links
  GEISHA SAP18

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  2
• CCDS
  CCDS52642.1

• Ensembl
  ENSMUSG00000061104 (Evidence)
• NCBI Gene
  100041953

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000061104	Ensembl Gene Model | MGI Sequence Detail	789	C57BL/6J
transcript	ENSMUST00000074053	Ensembl | MGI Sequence Detail	789	Not Applicable
polypeptide	ENSMUSP00000073697	Ensembl | MGI Sequence Detail	172	Not Applicable

Molecular
Reagents

• All nucleic 24

  cDNA 24

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:47659 Sasaki N, et al., Characterization of gene expression in mouse blastocyst using single-pass sequencing of 3995 clones. (Errata 1998;54:583). Genomics. 1998 Apr 15;49(2):167-79
• Latest
  J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86

TSS for Sap18b:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79008	Chr8:96551981-96551982 (+)	8 bp