A230020J21Rik Gene Detail

Summary

• Symbol
  A230020J21Rik
• Name
  RIKEN cDNA A230020J21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3704207
  NCBI Gene: 100125339
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:190757548-190761978 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 96.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  184 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704207	lncRNA gene	Chr1:190757547-190762915 (+)
129S1/SvImJ	ENSMUSG00200004467	lncRNA gene	Chr1:188537287-188541701 (+)
A/J	ENSMUSG00195009328	lncRNA gene	Chr1:188117172-188121598 (+)
AKR/J	ENSMUSG00220005401	lncRNA gene	Chr1:187361028-187365454 (+)
BALB/cJ	ENSMUSG00180018804	lncRNA gene	Chr1:188182605-188187031 (+)
C3H/HeJ	ENSMUSG00175022081	lncRNA gene	Chr1:188370620-188375046 (+)
C57BL/6NJ	ENSMUSG00215021778	lncRNA gene	Chr1:187590027-187594459 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002477	antisense lncRNA gene	Chr1:180829789-180833998 (+)
CAST/EiJ	ENSTCUG00005002185	lncRNA gene	Chr1:186145683-186150151 (+)
CBA/J	ENSMUSG00210003936	lncRNA gene	Chr1:188032368-188036780 (+)
DBA/2J	ENSMUSG00185010831	lncRNA gene	Chr1:192645620-192650032 (+)
FVB/NJ	ENSMUSG00205004618	lncRNA gene	Chr1:187028651-187033077 (+)
JF1/MsJ	ENSUMUG00000006482	lncRNA gene	Chr1:191630722-191635153 (+)
LP/J	ENSMUSG00230025663	lncRNA gene	Chr1:192181510-192185936 (+)
NOD/ShiLtJ	ENSMUSG00190032929	lncRNA gene	Chr1:188015898-188020310 (+)
NZO/HlLtJ	ENSMUSG00225016981	lncRNA gene	Chr1:195942550-195946962 (+)
PWK/PhJ	ENSLUMG00010006924	lncRNA gene	Chr1:186864591-186869003 (+)
SPRET/EiJ	ENSMSPG00010024602	lncRNA gene	Chr1:190403608-190408073 (+)
WSB/EiJ	ENSIUOG00005004993	lncRNA gene	Chr1:187366531-187370961 (+)

Homology

• Gene Tree
  A230020J21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000097845 (Evidence)
• NCBI Gene
  100125339

Representative Sequences			Length	Strain/Species
genomic	100125339	NCBI Gene Model | MGI Sequence Detail	4431	C57BL/6J
transcript	NR_027298	RefSeq | MGI Sequence Detail	1649	C57BL/6
polypeptide	Q8CAM2	UniProt | EBI | MGI Sequence Detail	278	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 1
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;