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Gm8909
Gene Detail
Symbol

Name
ID
Gm8909
predicted gene 8909
MGI:3704134
Feature Type
protein coding gene
Genetic Map
Chromosome 17
18.97 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr17:36164443-36168537 bp, - strand
From VEGA annotation of GRCm38

  4095 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:128352  Vertebrate Homology Class
1 human; 11 mouse; 12 rat; 1 chimpanzee; 1 rhesus macaque; 24 chicken; 7 zebrafish

HCOP human homology predictions: HLA-A
Protein SuperFamily: class I histocompatibility antigen
Gene Tree: Gm8909

Human
homologs
HLA-A, major histocompatibility complex, class I, A
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 3105
neXtProt AC: NX_P04439, NX_P30443

Human Synonyms: HLAA

Human Chr (Location): 6p21.3; chr6:29942470-29945884 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human HLA-A

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Gene trapped(1) Targeted(1)
Genomic Mutations involving Gm8909 (1)
Incidental mutations (data from Mutagenetix , APF )
Phenotype Images(1)
Interactions
Gm8909 interacts with 35 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
Expression
Other mouse links: GEO   Expression Atlas
Other database
links
VEGA Gene Model OTTMUSG00000037026 (Evidence)
Ensembl Gene Model ENSMUSG00000073402 (Evidence)
Entrez Gene 667977 (Evidence)
Consensus CDS Project CCDS37610.2
International Mouse Phenotyping Consortium Status Gm8909
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037026 VEGA Gene Model | MGI Sequence Detail 4095 C57BL/6J ±  kb
transcript OTTMUST00000095222 VEGA | MGI Sequence Detail 1428 Not Applicable 
polypeptide OTTMUSP00000053121 VEGA | MGI Sequence Detail 396 Not Applicable 

For the selected sequences
All sequences(40) RefSeq(17) UniProt(4)
Polymorphisms
SNPs within 2kb(19 from dbSNP Build 137)    SNPs within 2kb including multiple locations(27)
Protein-related
information
ResourceIDDescription
InterPro IPR003597 Immunoglobulin C1-set
InterPro IPR007110 Immunoglobulin-like domain
InterPro IPR013783 Immunoglobulin-like fold
InterPro IPR003006 Immunoglobulin/major histocompatibility complex, conserved site
InterPro IPR011162 MHC classes I/II-like antigen recognition protein
InterPro IPR001039 MHC class I, alpha chain, alpha1/alpha2
InterPro IPR011161 MHC class I-like antigen recognition
References
(Earliest) J:23000 MGD Nomenclature Committee, 2/14/1995;
(Latest) J:161428 Gaudet P, et al., Annotation inferences using phylogenetic trees. 2010;
All references(9)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory