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Gm8909
Gene Detail
Symbol

Name
ID
Gm8909
predicted gene 8909
MGI:3704134
Feature Type
protein coding gene
Genetic Map
Chromosome 17
18.97 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr17:36164443-36168537 bp, - strand
From VEGA annotation of GRCm38

  4095 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:128352  Vertebrate Homology Class
1 human; 11 mouse; 12 rat; 1 chimpanzee; 1 rhesus macaque; 24 chicken; 7 zebrafish

Protein SuperFamily: class I histocompatibility antigen
Gene Tree: Gm8909

Human
homologs
Human Homolog HLA-A, major histocompatibility complex, class I, A
NCBI Gene ID 3105
neXtProt AC  NX_P01892, NX_P04439, NX_P30443, NX_P30450
Human Synonyms  HLAA
Human Chr (Location)  6p21.3; chr6:29942470-29945884 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human HLA-A
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Gene trapped(1) Targeted(1)
Genomic Mutations involving Gm8909 (1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Gm8909 interacts with 35 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
Expression
External Resources: GEO   Expression Atlas
Other database
links
VEGA Gene ModelOTTMUSG00000037026 (Evidence)
Ensembl Gene ModelENSMUSG00000073402 (Evidence)
Entrez Gene667977 (Evidence)
Consensus CDS ProjectCCDS37610.2
International Mouse Knockout Project StatusGm8909
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037026 VEGA Gene Model | MGI Sequence Detail 4095 C57BL/6J ±  kb
transcript OTTMUST00000095222 VEGA | MGI Sequence Detail 1428 Not Applicable 
polypeptide OTTMUSP00000053121 VEGA | MGI Sequence Detail 396 Not Applicable 

For the selected sequences
All sequences(42) RefSeq(15) UniProt(8)
Polymorphisms
SNPs within 2kb(19 from dbSNP Build 137)    SNPs within 2kb including multiple locations(27)
Protein-related
information
ResourceIDDescription
InterPro IPR003597 Immunoglobulin C1-set
InterPro IPR007110 Immunoglobulin-like domain
InterPro IPR013783 Immunoglobulin-like fold
InterPro IPR003006 Immunoglobulin/major histocompatibility complex, conserved site
InterPro IPR011162 MHC classes I/II-like antigen recognition protein
InterPro IPR001039 MHC class I, alpha chain, alpha1/alpha2
InterPro IPR011161 MHC class I-like antigen recognition
References
(Earliest) J:23000 MGD Nomenclature Committee, 2/14/1995;
(Latest) J:161428 Gaudet P, et al., Annotation inferences using phylogenetic trees. 2010;
All references(9)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory