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Trav12n-3 Gene Detail
Summary
  • Symbol
    Trav12n-3
  • Name
    T cell receptor alpha variable 12N-3
  • Feature Type
    gene segment
  • IDs
    MGI:3704131
    NCBI Gene: 667681
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr14:53240751-53241244 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.28 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    10
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3704131
gene segment Chr14:53240745-53241244 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002537
gene segment Chr14:46932306-46932871 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002652
gene segment Chr14:49935728-49936227 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002460
gene segment Chr14:44260071-44262258 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0002515
gene segment Chr14:45830868-45831338 (+)
LP/J MGP_LPJ_G0002532
gene segment Chr14:47652246-47652756 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002461
gene segment Chr14:50019365-50031813 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002632
gene segment Chr14:46740207-47062545 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002368
gene segment Chr14:43170686-43481709 (-)
WSB/EiJ MGP_WSBEiJ_G0002447
gene segment Chr10:32562347-32565382 (+)



Homology
less
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 667681 NCBI Gene Model | MGI Sequence Detail 494 C57BL/6J ±  kb
polypeptide A0A075B6A4 UniProt | EBI | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 7
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
02/23/2021
MGI 6.16
The Jackson Laboratory