Gm13262 Gene Detail

Summary

• Symbol
  Gm13262
• Name
  predicted gene 13262

• Feature Type
  lncRNA gene
• IDs
  MGI:3703165
  NCBI Gene: 100126244
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:9910989-9919489 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 6.73 cM

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3703165	lncRNA gene	Chr2:9910960-9920393 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003503	antisense lncRNA gene	Chr2:7243869-7252321 (+)
A/J	MGP_AJ_G0003483	antisense lncRNA gene	Chr2:6921480-6930213 (+)
AKR/J	MGP_AKRJ_G0003462	antisense lncRNA gene	Chr2:7137412-7145872 (+)
BALB/cJ	MGP_BALBcJ_G0003472	antisense lncRNA gene	Chr2:6922423-6930891 (+)
C3H/HeJ	MGP_C3HHeJ_G0003420	antisense lncRNA gene	Chr2:7095846-7104342 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003610	antisense lncRNA gene	Chr2:7439951-7448410 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003120	antisense lncRNA gene	Chr2:6429978-6438599 (+)
CAST/EiJ	MGP_CASTEiJ_G0003383	antisense lncRNA gene	Chr2:7113087-7121795 (+)
CBA/J	MGP_CBAJ_G0003417	antisense lncRNA gene	Chr2:7732021-7743831 (+)
DBA/2J	MGP_DBA2J_G0003425	antisense lncRNA gene	Chr2:6852923-6861375 (+)
FVB/NJ	MGP_FVBNJ_G0003444	antisense lncRNA gene	Chr2:6793078-6801532 (+)
LP/J	MGP_LPJ_G0003498	antisense lncRNA gene	Chr2:7118743-7127195 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003432	antisense lncRNA gene	Chr2:7728201-7736690 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003613	antisense lncRNA gene	Chr2:7090477-7101206 (+)
PWK/PhJ	MGP_PWKPhJ_G0003339	antisense lncRNA gene	Chr2:6834306-6843435 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003284	antisense lncRNA gene	Chr2:7077747-7086182 (+)
WSB/EiJ	MGP_WSBEiJ_G0003418	antisense lncRNA gene	Chr2:7187937-7197359 (+)

Homology

• Gene Tree
  Gm13262
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000075534 (Evidence)
• NCBI Gene
  100126244

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000075534	Ensembl Gene Model | MGI Sequence Detail	8501	C57BL/6J
transcript	ENSMUST00000149014	Ensembl | MGI Sequence Detail	2022	Not Applicable
polypeptide	Q3UP46	UniProt | EBI | MGI Sequence Detail	50	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13262:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16074	Chr2:9911094-9911102 (+)	109 bp