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Gm10499
Pseudogene Detail
Symbol

Name
ID
Gm10499
predicted gene 10499
MGI:3702919
Feature Type
pseudogene
Genetic Map
Chromosome 17
18.95 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr17:36141758-36145923 bp, - strand
From VEGA annotation of GRCm38

  4166 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:128352  Vertebrate Homology Class
1 human; 11 mouse; 12 rat; 1 chimpanzee; 1 rhesus macaque; 24 chicken; 7 zebrafish

HCOP human homology predictions: HLA-A
Gene Tree: Gm10499

Human
homologs
HLA-A, major histocompatibility complex, class I, A
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 3105
neXtProt AC: NX_P04439, NX_P30443

Human Synonyms: HLAA

Human Chr (Location): 6p21.3; chr6:29942470-29945884 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human HLA-A

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(4) Targeted(1)
Genomic Mutations involving Gm10499 (1)
Phenotype Images(1)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
Expression
cDNA source data(1)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(1) cDNA(1)
Other database
links
VEGA Gene Model OTTMUSG00000037348 (Evidence)
Ensembl Gene Model ENSMUSG00000073403 (Evidence)
Entrez Gene 69717 (Evidence)
DoTS DT.91324658
International Mouse Phenotyping Consortium Status Gm10499
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037348 VEGA Gene Model | MGI Sequence Detail 4166 C57BL/6J ±  kb
transcript OTTMUST00000096360 VEGA | MGI Sequence Detail 1698 Not Applicable 
polypeptide XP_006544859 RefSeq | MGI Sequence Detail 391 mixed 

For the selected sequences
All sequences(12) RefSeq(4)
Polymorphisms
SNPs within 2kb(66 from dbSNP Build 137)    SNPs within 2kb including multiple locations(68)
References
(Earliest) J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
All references(10)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory