Trav17 Gene Detail

Summary

• Symbol
  Trav17
• Name
  T cell receptor alpha variable 17
• Synonyms
  OTTMUSG00000015028

• Feature Type
  gene segment
• IDs
  MGI:3702128
  NCBI Gene: 627777
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:54044096-54044572 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702128	gene segment	Chr14:54044096-54044572 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002566	gene segment	Chr14:47715903-47716379 (+)
A/J	MGP_AJ_G0002537	gene segment	Chr14:46823081-46823557 (+)
AKR/J	MGP_AKRJ_G0002528	gene segment	Chr14:48506784-48507260 (+)
BALB/cJ	MGP_BALBcJ_G0002523	gene segment	Chr14:46793956-46794432 (+)
C3H/HeJ	MGP_C3HHeJ_G0002490	gene segment	Chr14:48188464-48188940 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002664	gene segment	Chr14:50165757-50166233 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002234	gene segment	Chr14:45259018-45259490 (+)
CAST/EiJ	MGP_CASTEiJ_G0002476	gene segment	Chr14:44444151-44444627 (+)
CBA/J	MGP_CBAJ_G0002489	gene segment	Chr14:51629960-51630436 (+)
DBA/2J	MGP_DBA2J_G0002493	gene segment	Chr14:46549714-46550190 (+)
FVB/NJ	MGP_FVBNJ_G0002521	gene segment	Chr14:46034070-46034546 (+)
LP/J	MGP_LPJ_G0002572	gene segment	Chr14:48748687-48749163 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002496	gene segment	Chr14:51089396-51089872 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002674	gene segment	Chr14:47697926-47698402 (+)
PWK/PhJ	MGP_PWKPhJ_G0002435	gene segment	Chr14:43096415-43096891 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002387	gene segment	Chr14:43677328-43677804 (+)
WSB/EiJ	MGP_WSBEiJ_G0002491	gene segment	Chr14:48007671-48008147 (+)

Homology

• Human Ortholog
  TRAV8-3, T cell receptor alpha variable 8-3

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV8-3, T cell receptor alpha variable 8-3
  
• Synonyms
  TCRAV1S4, TCRAV8S3, TRAV83
• Links
  HGNC:12148

  NCBI Gene ID: 28683

  UniProt: A0A0A6YYJ7

  
  
• Chr Location
  14q11.2; chr14:21852558-21853006 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav17 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TRAV8-3
• Gene Tree
  Trav17
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000096397 (Evidence)
• NCBI Gene
  627777

Representative Sequences			Length	Strain/Species
genomic	627777	NCBI Gene Model | MGI Sequence Detail	477	C57BL/6J
polypeptide	A0A075B655	UniProt | EBI | MGI Sequence Detail	113	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051287 T cell receptor variable region

References

• Summaries
  All 8
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trav17:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125501	Chr14:54043920-54043929 (+)	-171 bp
Tssr125502	Chr14:54043954-54043977 (+)	-130 bp