Msantd5f9 Gene Detail

Summary

• Symbol
  Msantd5f9
• Name
  Myb/SANT DNA binding domain containing 5 family member 9
• Synonyms
  Gm11756

• Feature Type
  protein coding gene
• IDs
  MGI:3702095
  NCBI Gene: 623281
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:73834964-73838953 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 36.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  24 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702095	protein coding gene	Chr4:73834964-73838997 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0021359	protein coding gene	Chr14:50115105-50121751 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0021362	protein coding gene	Chr14:50108625-50110757 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0021110	protein coding gene	Chr14:55280906-55291344 (+)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0021305	protein coding gene	Chr14:52186730-52189283 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0021238	protein coding gene	Chr14:54647982-54654194 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  MSANTD5, Myb/SANT DNA binding domain containing 5

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  MSANTD5, Myb/SANT DNA binding domain containing 5
  
• Links
  HGNC:55184

  NCBI Gene ID: 102724657

  neXtProt AC: NX_A0A3B3IT52

  UniProt: A0A3B3IT52

  
  
• Chr Location
  chr5:178691534-178707472 (-)  GRCh38

---

• MGI Vertebrate Homology
  Msantd5f9 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: MSANTD5
• Gene Tree
  Msantd5f9
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Msantd5f9
• Find Mice (IMSR)
  9 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS51210.1

• Ensembl
  ENSMUSG00000093962 (Evidence)
• NCBI Gene
  623281

Representative Sequences			Length	Strain/Species
genomic	623281	NCBI Gene Model | MGI Sequence Detail	3990	C57BL/6J
transcript	NM_001126326	RefSeq | MGI Sequence Detail	1269	C57BL/6
polypeptide	NP_001119798	RefSeq | MGI Sequence Detail	356	C57BL/6

Protein
Information

• UniProt
  2 Sequences

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;