0610009E02Rik Gene Detail

Summary

• Symbol
  0610009E02Rik
• Name
  RIKEN cDNA 0610009E02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3698435
  NCBI Gene: 100125929
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:26335936-26349402 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 18.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3698435	lncRNA gene	Chr2:26335708-26349408 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015402	unclassified non-coding RNA gene	Chr2:24400151-24413837 (+)
A/J	MGP_AJ_G0015377	unclassified non-coding RNA gene	Chr2:23462896-23477589 (+)
AKR/J	MGP_AKRJ_G0015341	unclassified non-coding RNA gene	Chr2:24227699-24241363 (+)
BALB/cJ	MGP_BALBcJ_G0015341	unclassified non-coding RNA gene	Chr2:23572635-23587804 (+)
C3H/HeJ	MGP_C3HHeJ_G0015165	unclassified non-coding RNA gene	Chr2:24185824-24199570 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015795	unclassified non-coding RNA gene	Chr2:25183244-25196908 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013536	unclassified non-coding RNA gene	Chr2:22344673-22358307 (+)
CAST/EiJ	MGP_CASTEiJ_G0014716	unclassified non-coding RNA gene	Chr2:24062517-24078154 (+)
CBA/J	MGP_CBAJ_G0015144	unclassified non-coding RNA gene	Chr2:26037659-26053375 (+)
DBA/2J	MGP_DBA2J_G0015239	unclassified non-coding RNA gene	Chr2:23284379-23298535 (+)
FVB/NJ	MGP_FVBNJ_G0015246	unclassified non-coding RNA gene	Chr2:23036620-23053367 (+)
LP/J	MGP_LPJ_G0015319	unclassified non-coding RNA gene	Chr2:24343668-24357396 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015272	unclassified non-coding RNA gene	Chr2:26185662-26200822 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015834	unclassified non-coding RNA gene	Chr2:24185784-24199474 (+)
PWK/PhJ	MGP_PWKPhJ_G0014505	unclassified non-coding RNA gene	Chr2:23089390-23104259 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014293	unclassified non-coding RNA gene	Chr2:24318921-24333408 (+)
WSB/EiJ	MGP_WSBEiJ_G0014823	unclassified non-coding RNA gene	Chr2:24291592-24305588 (+)

Homology

• Gene Tree
  0610009E02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  9
• Gene trapped
  9
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  3

• Ensembl
  ENSMUSG00000086714 (Evidence)
• NCBI Gene
  100125929

Representative Sequences			Length	Strain/Species
genomic	100125929	NCBI Gene Model | MGI Sequence Detail	13467	C57BL/6J
transcript	NR_152207	RefSeq | MGI Sequence Detail	1398	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 0610009E02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16794	Chr2:26335906-26335963 (+)	-1 bp
Tssr16795	Chr2:26336033-26336045 (+)	103 bp
Tssr16796	Chr2:26344976-26344977 (+)	9,041 bp