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I830012O16Rik
Gene Detail
 Symbol
Name
ID
I830012O16Rik
RIKEN cDNA I830012O16 gene
MGI:3698419
Feature Type protein coding gene
Genetic Map
Chromosome 19
29.76 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr19:34607970-34613401 bp, + strand
From VEGA annotation of GRCm38

  5432 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:1189  Vertebrate Homology Class
1 human; 2 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Protein SuperFamily: interferon-induced 56K protein
Gene Tree: I830012O16Rik

Human
homologs
Human Homolog IFIT3, interferon-induced protein with tetratricopeptide repeats 3
NCBI Gene ID 3437
neXtProt AC  NX_O14879
Human Synonyms  CIG-49, GARG-49, IFI60, IFIT4, IRG2, ISG60, P60, RIG-G
Human Chr (Location)  10q24; chr10:89327845-89340968 (+)  GRCh38
Mutations,
alleles, and
phenotypes
Incidental mutations (data from APF )
Interactions
I830012O16Rik interacts with 153 markers (Mir15a, Mir15b, Mir16-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component cytoplasm, mitochondrion
Function identical protein binding
Expression
cDNA source data(13)
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(13) cDNA(13)
Microarray probesets(1)
Other database
links
VEGA Gene ModelOTTMUSG00000016648 (Evidence)
Ensembl Gene ModelENSMUSG00000062488 (Evidence)
Entrez Gene667370 (Evidence)
UniGene271850
Consensus CDS ProjectCCDS50423.1
International Mouse Knockout Project StatusI830012O16Rik
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016648 VEGA Gene Model | MGI Sequence Detail 5432 C57BL/6J ±  kb
transcript OTTMUST00000040266 VEGA | MGI Sequence Detail 2000 Not Applicable 
polypeptide OTTMUSP00000017987 VEGA | MGI Sequence Detail 403 Not Applicable 

For the selected sequences
All sequences(19) RefSeq(4) UniProt(3)
Polymorphisms SNPs within 2kb(85 from dbSNP Build 137)    SNPs within 2kb including multiple locations(125)
Protein-related
information
ResourceIDDescription
InterPro IPR024122 Interferon-induced protein with tetratricopeptide repeats 3
InterPro IPR011990 Tetratricopeptide-like helical
InterPro IPR019734 Tetratricopeptide repeat
InterPro IPR013026 Tetratricopeptide repeat-containing domain
InterPro IPR001440 Tetratricopeptide TPR-1
InterPro IPR013105 Tetratricopeptide TPR2
References (Earliest) J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
(Latest) J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2014;
All references(13)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory