Phtf1os Gene Detail

Summary

• Symbol
  Phtf1os
• Name
  putative homeodomain transcription factor 1, opposite strand
• Synonyms
  A130049A11Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3698050
  NCBI Gene: 100125931
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:103871852-103875632 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 45.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  15 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3698050	antisense lncRNA gene	Chr3:103871852-103875897 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003807	antisense lncRNA gene	Chr3:105269093-105273138 (-)
A/J	MGP_AJ_G0003787	antisense lncRNA gene	Chr3:101912871-101916916 (-)
AKR/J	MGP_AKRJ_G0003763	antisense lncRNA gene	Chr3:104399043-104403088 (-)
BALB/cJ	MGP_BALBcJ_G0003774	antisense lncRNA gene	Chr3:101681586-101685624 (-)
C3H/HeJ	MGP_C3HHeJ_G0003721	antisense lncRNA gene	Chr3:104772978-104777023 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003916	antisense lncRNA gene	Chr3:109164810-109168855 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003419	antisense lncRNA gene	Chr3:98038083-98042144 (-)
CAST/EiJ	MGP_CASTEiJ_G0003685	antisense lncRNA gene	Chr3:103884525-103888570 (-)
CBA/J	MGP_CBAJ_G0003716	antisense lncRNA gene	Chr3:112897947-112901992 (-)
DBA/2J	MGP_DBA2J_G0003727	antisense lncRNA gene	Chr3:101156944-101160989 (-)
FVB/NJ	MGP_FVBNJ_G0003748	antisense lncRNA gene	Chr3:99083267-99087312 (-)
LP/J	MGP_LPJ_G0003809	antisense lncRNA gene	Chr3:106605763-106609808 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003735	antisense lncRNA gene	Chr3:119020991-119025029 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003917	antisense lncRNA gene	Chr3:103957164-103961202 (-)
PWK/PhJ	MGP_PWKPhJ_G0003641	antisense lncRNA gene	Chr3:100933888-100937929 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003585	antisense lncRNA gene	Chr3:102020314-102024370 (-)
WSB/EiJ	MGP_WSBEiJ_G0003721	antisense lncRNA gene	Chr3:104514401-104518446 (-)

Homology

• Gene Tree
  Phtf1os
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  2 involving Phtf1os
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000089998 (Evidence)
• NCBI Gene
  100125931

Representative Sequences			Length	Strain/Species
genomic	100125931	NCBI Gene Model | MGI Sequence Detail	3781	C57BL/6J
transcript	NR_030676	RefSeq | MGI Sequence Detail	3781	C57BL/6
polypeptide	Q8BQ56	UniProt | EBI | MGI Sequence Detail	118	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Diseases 1

  Phenotypes 6
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Phtf1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34872	Chr3:103875594-103875637 (-)	16 bp