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Cstdc6 Gene Detail
Summary
  • Symbol
    Cstdc6
  • Name
    cystatin domain containing 6
  • Synonyms
    BC117090, Gm1975
  • Feature Type
    protein coding gene
  • IDs
    MGI:3696881
    NCBI Gene: 100038854
  • Gene Overview
    MyGene.info: CSTA
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:36321665-36334332 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 25.47 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    41 from dbSNP Build 142
  • Strain Annotations
    5
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3696881
protein coding gene Chr16:36321665-36334332 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022785
protein coding gene Chr16:34726612-34731566 (-)
A/J MGP_AJ_G0022750
protein coding gene Chr16:32955468-32960317 (-)
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0023212
protein coding gene Chr16:34187973-34204522 (-)
PWK/PhJ MGP_PWKPhJ_G0021783
protein coding gene Chr16:33248024-33418365 (-)
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    CSTA, cystatin A
  • Vertebrate Orthologs
    3
  • Human Ortholog
    CSTA, cystatin A
    Orthology source: HGNC
  • Synonyms
    AREI, PSS4, STF1, STFA
  • Links
    NCBI Gene ID: 1475
    neXtProt AC: NX_P01040
    UniProt: P01040

  • Chr Location
    3q21.1; chr3:122325164-122341969 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 100038854 NCBI Gene Model | MGI Sequence Detail 12668 C57BL/6J ±  kb
transcript NM_001001332 RefSeq | MGI Sequence Detail 387 Not Specified  
polypeptide NP_001001332 RefSeq | MGI Sequence Detail 96 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR000010 Cystatin domain
    IPR001713 Proteinase inhibitor I25A, stefin
Molecular
Reagents
less

  • Microarray probesets 1
Other
Accession IDs
less
MGI:3780144
References
more
  • Summaries
    All 10
    Gene Ontology 1
  • Earliest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/13/2019
MGI 6.14
The Jackson Laboratory