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Pydc4 Gene Detail
Summary
  • Symbol
    Pydc4
  • Name
    pyrin domain containing 4
  • Synonyms
    E030037K03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3695276
    NCBI Gene: 623121
  • Gene Overview
    MyGene.info: IFI16
Location & Maps
more
  • Sequence Map
    Chr1:173566284-173599274 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      32991 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 80.49 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    IFI16, interferon gamma inducible protein 16
  • Vertebrate Orthologs
    16
  • Human Ortholog
    IFI16, interferon gamma inducible protein 16
    Orthology source: HomoloGene
  • Synonyms
    IFNGIP1, PYHIN2
  • Links
    NCBI Gene ID: 3428
    neXtProt AC: NX_Q16666

  • Chr Location
    1q22; chr1:158999973-159055155 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    2
  • Genomic Mutations
    2 involving Pydc4
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000033987 VEGA Gene Model | MGI Sequence Detail 32991 C57BL/6J ±  kb
transcript OTTMUST00000085766 VEGA | MGI Sequence Detail 1958 Not Applicable  
polypeptide OTTMUSP00000046366 VEGA | MGI Sequence Detail 586 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    688 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR004020 DAPIN domain
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 4
References
more
  • Summaries
    All 15
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:23000 MGD Nomenclature Committee, 2/14/1995;
  • Latest
    J:164563 Mouse Genome Informatics Scientific Curators, Human to Mouse ISO GO annotation transfer. 2010 Oct;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory