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Atxn1l
Gene Detail
 Symbol
Name
ID
Atxn1l
ataxin 1-like
MGI:3694797
Synonyms Boat, C330011L24Rik, D8Ertd587e, ENSMUSG00000069895
Feature Type protein coding gene
Genetic Map
Chromosome 8
57.22 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr8:109726451-109737739 bp, - strand
From NCBI annotation of GRCm38

  11289 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:19471  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Atxn1l

Human
homologs
Human Homolog ATXN1L, ataxin 1-like
NCBI Gene ID 342371
neXtProt AC  NX_P0C7T5
Human Synonyms  BOAT, BOAT1
Human Chr (Location)  16q22.2; chr16:71845991-71857333 (+)  GRCh38
Alleles
and
phenotypes
All alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a null mutation display partial postnatal lethality with hydroencephaly, kyphosis, lethargy and cachexia.
 
Gene Ontology
(GO)
classifications
All GO classifications: (12 annotations)
Process extracellular matrix organization, lung alveolus development, ...
Component cell projection, nucleus
Function DNA binding, protein binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
cDNA source data(67)
External Resources: GEO   ArrayExpress
Molecular
reagents
All nucleic(71) cDNA(70) Primer pair(1)
Microarray probesets(5)
Other database
links
Ensembl Gene ModelENSMUSG00000069895 (Evidence)
Entrez Gene52335 (Evidence)
UniGene276770
DFCITC1600996, TC1606441, TC1610295, TC1623414, TC1637369, TC1659385, TC1667914
DoTSDT.101190325, DT.101372103, DT.486618, DT.529879, DT.55270510, DT.94123839, DT.99839562
NIA Mouse Gene IndexU030237
Consensus CDS ProjectCCDS40474.1
International Mouse Knockout Project StatusAtxn1l
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 52335 NCBI Gene Model | MGI Sequence Detail 11289 C57BL/6J ±  kb
transcript NM_001080930 RefSeq | MGI Sequence Detail 7526 C57BL/6 
polypeptide P0C7T6 UniProt | EBI | MGI Sequence Detail 687 Not Applicable 

For the selected sequences
All sequences(35) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(18 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013723 Ataxin-1/HBP1 module (AXH)
Protein Ontology PR:000002975 ataxin-1-like
Graphical View of Protein Domain Structure
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:195268 Kahle JJ, et al., Ataxin1L Is a Regulator of HSC Function Highlighting the Utility of Cross-Tissue Comparisons for Gene Discovery. PLoS Genet. 2013 Mar;9(3):e1003359
All references(33)
Other
accession IDs
MGI:1261787, MGI:1926088, MGI:3642562

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory