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Krt87 Gene Detail
Summary
  • Symbol
    Krt87
  • Name
    keratin 87
  • Synonyms
    Krt2-25, Krt83
  • Feature Type
    protein coding gene
  • IDs
    MGI:3665486
    NCBI Gene: 406219
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:101431490-101438804 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 56.90 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    47 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3665486
protein coding gene Chr15:101431038-101438804 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022372
protein coding gene Chr15:103495012-103505741 (-)
A/J MGP_AJ_G0022334
protein coding gene Chr15:99399290-99406618 (-)
AKR/J MGP_AKRJ_G0022310
protein coding gene Chr15:102428052-102436307 (-)
BALB/cJ MGP_BALBcJ_G0022338
protein coding gene Chr15:99505326-99511887 (-)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0022786
protein coding gene Chr15:107341836-107350636 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020311
protein coding gene Chr15:95128677-95135217 (-)
CAST/EiJ MGP_CASTEiJ_G0021633
protein coding gene Chr15:103383219-103388737 (-)
CBA/J MGP_CBAJ_G0022077
protein coding gene Chr15:111074503-111086968 (-)
DBA/2J MGP_DBA2J_G0022204
protein coding gene Chr15:98728232-98736041 (-)
FVB/NJ MGP_FVBNJ_G0022183
protein coding gene Chr15:97782282-97793747 (-)
LP/J MGP_LPJ_G0022275
protein coding gene Chr15:103637634-103645202 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022204
protein coding gene Chr15:114746290-114759685 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022800
protein coding gene Chr15:102464253-102474385 (-)
PWK/PhJ MGP_PWKPhJ_G0021372
protein coding gene Chr15:98887973-98897892 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021204
protein coding gene Chr15:102357347-102365203 (-)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    KRT87P, keratin 87 pseudogene
  • Vertebrate Orthologs
    5
  • Human Ortholog
    KRT87P, keratin 87 pseudogene
    Orthology source: HGNC
  • Synonyms
    HBD, KRT121P, KRTHBP4, psihHbD
  • Links
    NCBI Gene ID: 85349
    UniProt: A6NCN2

  • Chr Location
    12q13.13; chr12:52252026-52258521 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    25 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 406219 NCBI Gene Model | MGI Sequence Detail 7315 C57BL/6J ±  kb
transcript NM_001003668 RefSeq | MGI Sequence Detail 1826 C57BL/6  
polypeptide Q6IMF0 UniProt | EBI | MGI Sequence Detail 495 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR001664 Intermediate filament protein
    IPR018039 Intermediate filament protein, conserved site
    IPR039008 Intermediate filament, rod domain
    IPR003054 Keratin, type II
    IPR032444 Keratin type II head
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
References
more
  • Summaries
    All 39
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 2
    Phenotypes 25
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory