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Gm11961 Gene Detail
Summary
  • Symbol
    Gm11961
  • Name
    predicted gene 11961
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3652303
    NCBI Gene: 327860
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr11:4570275-4580011 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 2.94 cM
Strain
Comparison
more
  • SNPs within 2kb
    58 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3652303
 lncRNA gene Chr11:4570275-4580011 (-)
129S1/SvImJ MGP_129S1SvImJ_G0002914
 antisense lncRNA gene Chr11:1588597-1598684 (-)
A/J MGP_AJ_G0002891
 antisense lncRNA gene Chr11:1569228-1578951 (-)
AKR/J MGP_AKRJ_G0002872
 antisense lncRNA gene Chr11:1635016-1647204 (-)
BALB/cJ MGP_BALBcJ_G0002879
 antisense lncRNA gene Chr11:1544895-1555303 (-)
C3H/HeJ MGP_C3HHeJ_G0002834
 antisense lncRNA gene Chr11:1528098-1538847 (-)
C57BL/6NJ MGP_C57BL6NJ_G0003021
 antisense lncRNA gene Chr11:1661405-1671907 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0002563
 antisense lncRNA gene Chr11:1464671-1474107 (-)
CAST/EiJ MGP_CASTEiJ_G0002806
 antisense lncRNA gene Chr11:1503372-1514255 (-)
CBA/J MGP_CBAJ_G0002831
 antisense lncRNA gene Chr11:1925746-1936482 (-)
DBA/2J MGP_DBA2J_G0002838
 antisense lncRNA gene Chr11:1472110-1481675 (-)
FVB/NJ MGP_FVBNJ_G0002857
 antisense lncRNA gene Chr11:1511026-1521110 (-)
LP/J MGP_LPJ_G0002913
 antisense lncRNA gene Chr11:1680120-1691382 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0002845
 antisense lncRNA gene Chr11:1603317-1612999 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0003024
 antisense lncRNA gene Chr11:1644602-1655066 (-)
PWK/PhJ MGP_PWKPhJ_G0002764
 antisense lncRNA gene Chr11:1482162-1491904 (-)
SPRET/EiJ MGP_SPRETEiJ_G0002713
 antisense lncRNA gene Chr11:1611968-1622616 (-)
WSB/EiJ MGP_WSBEiJ_G0002835
 antisense lncRNA gene Chr11:1515192-1524821 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 327860 NCBI Gene Model | MGI Sequence Detail 9737 C57BL/6J ±  kb
transcript NR_027798 RefSeq | MGI Sequence Detail 1319 C57BL/6  
polypeptide Q8C8V9 UniProt | EBI | MGI Sequence Detail 132 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 6
    Genomic 2
    cDNA 4
References
more
  • Summaries
    All 14
    Phenotypes 3
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory