Hnf1aos1 Gene Detail

Summary

• Symbol
  Hnf1aos1
• Name
  HNF1 homeobox A, opposite strand 1
• Synonyms
  Gm13824, Haster

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3652225
  NCBI Gene: 102638537
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:115106802-115135985 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 55.99 cM

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652225	antisense lncRNA gene	Chr5:115106802-115136105 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004149	antisense lncRNA gene	Chr5:117780963-117810850 (+)
A/J	MGP_AJ_G0004128	antisense lncRNA gene	Chr5:113121089-113150013 (+)
AKR/J	MGP_AKRJ_G0004109	antisense lncRNA gene	Chr5:116720896-116754798 (+)
BALB/cJ	MGP_BALBcJ_G0004115	antisense lncRNA gene	Chr5:114517510-114547094 (+)
C3H/HeJ	MGP_C3HHeJ_G0004063	antisense lncRNA gene	Chr5:117247483-117281260 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004263	antisense lncRNA gene	Chr5:122334297-122368311 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003740	antisense lncRNA gene	Chr5:107914597-107945631 (+)
CAST/EiJ	MGP_CASTEiJ_G0004025	antisense lncRNA gene	Chr5:116156323-116191821 (+)
CBA/J	MGP_CBAJ_G0004057	antisense lncRNA gene	Chr5:127005725-127041067 (+)
DBA/2J	MGP_DBA2J_G0004072	antisense lncRNA gene	Chr5:113199534-113228521 (+)
FVB/NJ	MGP_FVBNJ_G0004089	antisense lncRNA gene	Chr5:112013127-112042843 (+)
LP/J	MGP_LPJ_G0004150	antisense lncRNA gene	Chr5:118360663-118390464 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004078	antisense lncRNA gene	Chr5:131372504-131405512 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004260	antisense lncRNA gene	Chr5:116198970-116229784 (+)
PWK/PhJ	MGP_PWKPhJ_G0003978	antisense lncRNA gene	Chr5:111849323-111880239 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003922	antisense lncRNA gene	Chr5:113743587-113780958 (+)
WSB/EiJ	MGP_WSBEiJ_G0004061	antisense lncRNA gene	Chr5:116784313-116815049 (+)

Homology

• Gene Tree
  Hnf1aos1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  11
• Chemically induced (other)
  1
• Gene trapped
  8
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  3 involving Hnf1aos1
• Find Mice (IMSR)
  9 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  715
• Tissues
  8
• Literature Summary
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  5

• Ensembl
  ENSMUSG00000086054 (Evidence)
• NCBI Gene
  102638537

Representative Sequences			Length	Strain/Species
genomic	102638537	NCBI Gene Model | MGI Sequence Detail	29184	C57BL/6J
transcript	KY468058	GenBank | ENA | DDBJ | MGI Sequence Detail	665	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  Primer pair 1

References

• Summaries
  All 16

  Developmental Gene Expression 2

  Diseases 1

  Phenotypes 9
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:332319 Beucher A, et al., The HASTER lncRNA promoter is a cis-acting transcriptional stabilizer of HNF1A. Nat Cell Biol. 2022 Oct;24(10):1528-1540

TSS for Hnf1aos1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48194	Chr5:115106818-115106832 (+)	23 bp
Tssr48198	Chr5:115127722-115127742 (+)	20,930 bp