Fndc10l Pseudogene Detail

Summary

• Symbol
  Fndc10l
• Name
  ibronectin type III domain containing 10 like
• Synonyms
  Gm14131

• Feature Type
  pseudogene
• IDs
  MGI:3652215
  NCBI Gene: 241715
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:149198607-149199325 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 73.80 cM

Strain
Comparison

• SNPs within 2kb
  57 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652215	pseudogene	Chr2:149198568-149199585 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011916	pseudogene	Chr2:153720612-153721330 (+)
A/J	MGP_AJ_G0011909	pseudogene	Chr2:147516049-147516767 (+)
AKR/J	MGP_AKRJ_G0011874	pseudogene	Chr2:151747188-151747906 (+)
BALB/cJ	MGP_BALBcJ_G0011885	pseudogene	Chr2:147931670-147932388 (+)
C3H/HeJ	MGP_C3HHeJ_G0011767	pseudogene	Chr2:152241646-152242364 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012185	pseudogene	Chr2:158249453-158250171 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011553	pseudogene	Chr2:152602135-152602847 (+)
CBA/J	MGP_CBAJ_G0011742	pseudogene	Chr2:164004916-164005634 (+)
DBA/2J	MGP_DBA2J_G0011795	pseudogene	Chr2:146738043-146738761 (+)
FVB/NJ	MGP_FVBNJ_G0011800	pseudogene	Chr2:145246860-145247578 (+)
LP/J	MGP_LPJ_G0011863	pseudogene	Chr2:153872192-153872910 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011802	pseudogene	Chr2:168173125-168173844 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012182	pseudogene	Chr2:151746660-151747378 (+)
PWK/PhJ	MGP_PWKPhJ_G0011403	pseudogene	Chr2:146454846-146455564 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011574	pseudogene	Chr2:152700728-152701446 (+)

Homology

• Human Ortholog
  FNDC10, fibronectin type III domain containing 10

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  FNDC10, fibronectin type III domain containing 10
  
• Synonyms
  C1orf233
• Links
  HGNC:42951

  NCBI Gene ID: 643988

  neXtProt AC: NX_F2Z333

  UniProt: F2Z333

  
  
• Chr Location
  1p36.33; chr1:1598012-1600135 (-)  GRCh38

---

• MGI Vertebrate Homology
  Fndc10l stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: FNDC10
• Gene Tree
  Fndc10l
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Fndc10l
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000081470 (Evidence)
• NCBI Gene
  241715

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081470	Ensembl Gene Model | MGI Sequence Detail	719	C57BL/6J
transcript	ENSMUST00000119636	Ensembl | MGI Sequence Detail	719	Not Applicable

Molecular
Reagents

• All nucleic 1

  Genomic 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:39363 Wickman K, et al., Partial structure, chromosome localization, and expression of the mouse Icln gene. Genomics. 1997 Mar 15;40(3):402-8