Gm12183 Pseudogene Detail

Summary

• Symbol
  Gm12183
• Name
  predicted gene 12183

• Feature Type
  pseudogene
• IDs
  MGI:3652175
  NCBI Gene: 432554
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:48642694-48644541 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 28.71 cM

Strain
Comparison

• SNPs within 2kb
  9 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652175	pseudogene	Chr11:48642436-48644703 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010691	pseudogene	Chr11:47771048-47773850 (-)
A/J	MGP_AJ_G0010686	pseudogene	Chr11:45873252-45875099 (-)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0010937	pseudogene	Chr11:49196010-49207991 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0010600	pseudogene	Chr11:45320431-45324147 (-)
LP/J	MGP_LPJ_G0010673	pseudogene	Chr11:48013468-48017735 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010575	pseudogene	Chr11:52930878-52932403 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010911	pseudogene	Chr11:47457143-47458990 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12183
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm12183
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000082454 (Evidence)
• NCBI Gene
  432554

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082454	Ensembl Gene Model | MGI Sequence Detail	1848	C57BL/6J
transcript	ENSMUST00000120566	Ensembl | MGI Sequence Detail	1848	Not Applicable

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:24517 Petry P, et al., Assignment to chromosome 11 of mouse p68 RNA helicase gene (Hlr1) and pseudogene (Hlr1-ps1). FEBS Lett. 1995 Apr 17;363(1-2):25-8

TSS for Gm12183:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107633	Chr11:48644335-48644364 (-)	191 bp
Tssr107632	Chr11:48644036-48644049 (-)	498 bp
Tssr107631	Chr11:48643329-48643332 (-)	1,210 bp