Cdk2ap1rt Gene Detail

Summary

• Symbol
  Cdk2ap1rt
• Name
  cyclin dependent kinase 2 associated protein 1 retrotransposed
• Synonyms
  Gm12184

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3652174
  NCBI Gene: 100039945
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:48716173-48717439 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 28.80 cM

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652174	protein coding gene	Chr11:48716173-48717482 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0023671	protein coding gene	Chr17:36601128-36602319 (-)
A/J	MGP_AJ_G0023628	protein coding gene	Chr17:35396442-35397633 (-)
AKR/J	MGP_AKRJ_G0023599	protein coding gene	Chr17:35810539-35811733 (-)
BALB/cJ	MGP_BALBcJ_G0023635	protein coding gene	Chr17:35591605-35592796 (-)
C3H/HeJ	MGP_C3HHeJ_G0023397	protein coding gene	Chr17:36316019-36317213 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0024073	protein coding gene	Chr17:38067923-38069114 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0022886	protein coding gene	Chr17:36349996-36351184 (-)
CBA/J	MGP_CBAJ_G0023375	protein coding gene	Chr17:39631880-39633074 (-)
DBA/2J	MGP_DBA2J_G0023499	protein coding gene	Chr17:34754353-34755544 (-)
FVB/NJ	MGP_FVBNJ_G0023472	protein coding gene	Chr17:34456127-34457318 (-)
LP/J	MGP_LPJ_G0023578	protein coding gene	Chr17:37012062-37013253 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023495	protein coding gene	Chr17:38437871-38439062 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024119	protein coding gene	Chr17:36118842-36120036 (-)
PWK/PhJ	MGP_PWKPhJ_G0022637	protein coding gene	Chr17:33560230-33561534 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0022955	protein coding gene	Chr17:36356823-36358013 (-)

Homology

• Human Ortholog
  CDK2AP1, cyclin dependent kinase 2 associated protein 1

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  CDK2AP1, cyclin dependent kinase 2 associated protein 1
  
• Synonyms
  doc-1, DOC1, DORC1, p12DOC-1, ST19
• Links
  HGNC:14002

  NCBI Gene ID: 8099

  UniProt: O14519

  
  
• Chr Location
  12q24.31; chr12:123250112-123272334 (-)  GRCh38

---

• MGI Vertebrate Homology
  Cdk2ap1rt stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: CDK2AP1
• Gene Tree
  Cdk2ap1rt
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Cdk2ap1rt
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas
• Other Vertebrate Links
  GEISHA CDK2AP1

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000078154 (Evidence)
• NCBI Gene
  100039945

Representative Sequences			Length	Strain/Species
genomic	100039945	NCBI Gene Model | MGI Sequence Detail	1267	C57BL/6J

Other
Accession IDs

MGI:7461936

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Cdk2ap1rt:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107642	Chr11:48717551-48717574 (-)	-124 bp
Tssr107641	Chr11:48717128-48717150 (-)	300 bp